There are 0 repository under polyploidy topic.
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
An R package for comparative transcriptomic analyses of hybrids and their progenitors
An R package for predicting ploidal level from sequence data using site-based heterozygosity
An R package for flow cytometry histogram analysis
A dashboard to explore and download the duplicated gene repertoire in eukaryote species
How does disturbance on a landscape affect the establishment of new polyploid plant species?
AKRUP: ancestral karyotype reconstruction universal pipeline
Data and code associated with the paper "HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors"
Scripts, information and data for publication in APPS.
Bioinformatic methods used in McElroy et al. (2021). Asexuality associated with marked genomic expansion of tandemly repeated rRNA and histone genes. Molecular Biology and Evolution.
Script and data supporting a Brassica network analysis manuscript submitted to Applications in Plant Sciences