microsatellites

There are 1 repository under microsatellites topic.

• PopGen.jl

  BioJulia / PopGen.jl

  Population Genetics in Julia

  geneticsgenomicssnpsmicrosatellitesfststructurepopgen
  Language:Julia 44
• Mercury-GS

  Open-Source-Satellite / Mercury-GS

  An Open Source Program that allows users to interact with a Spacecraft in a lab environment, pre-launch.

  spacecraftground-stationcubesatsatellitespacemicrosatellitemicrosatellitestestingtelemetryopen-source
  Language:Python 41

• RKMlab / perf

  PERF is an Exhaustive Repeat Finder

  genomicsrepeatsssrmicrosatellitesbiopythonfastatandemsimplesequencegenome
  Language:HTML 33

• EricArcher / strataG

  strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

  population-structurelocus-summariespopulation-geneticspopulation-genomicsgeneticssnpssnp-datadna-sequencesmicrosatellites
  Language:HTML 24

• PengJia6 / MSHunter

  Microsatellite genotyping

  microsatellitesshort-tandem-repeatsgenotypingphasing
  Language:Python 2

• RevantOrg / Revant

  De novo repeat inference from long reads

  repeatsmicrosatellitestransposonsde-novo-assemblypacbio-sequencingbioinformatics
  Language:Java 2

• ShawHahnLab / chiimp

  Computational, High-throughput Individual Identification through Microsatellite Profiling

  microsatellitesr-packageshort-tandem-repeatstandem-repeats
  Language:R 2

• avvaruakshay / looper

  Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.

  tandem-repeatsdna-sequencesmicrosatellitesdna-sequence-analysis
  Language:C++ 1
• STRyper

  jeanlain / STRyper

  A macOS application for microsatellite genotyping using capillary sequencing data.

  population-geneticsgenotypingmicrosatellites
  Language:Objective-C 1

• ShawHahnLab / chiimp-paper

  Supporting code for the microsatellite genotyping paper introducing CHIIMP

  microsatellitesreproducible-researchshort-tandem-repeatstandem-repeats
  Language:Makefile 1

• katieb314 / Salmon-Project

  Population genetics using microsatellites for different salmonid species

  geneticsmicrosatellitessalmongenomicscanada
  Language:Roff 0

• LuisRodrigoArce-Valdes / Gulf_Corvina_Microsatellites

  This repository contains all input files and analyses for the article "No effects of fishery collapse on the genetic diversity of the Gulf of California Corvina, Cynoscion othonopterus (Perciformes: Sciaenidae)"

  genetic-diversitymicrosatellitesnegulf-corvina
  Language:R 0

• gcerchia / STRike

  Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)

  bioinformaticsmicrosatellitesvep-annotationvep-plugin
  Language:Perl

• hisplan / docker-BEASTvntr

  Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites

  beast2beastvntrvntrmicrosatellites
  Language:Shell

• hisplan / docker-lobSTR

  Dockerized lobSTR: a short tandem repeat profiler for next generation sequencing data

  lobstrmicrosatellites

• santiagosnchez / STRlength2repeat

  Python code to convert STR length data to number of repetitions

  python3microsatellitesmutationmodelsbeast2
  Language:Python