diploid

There are 0 repository under diploid topic.

• edgardomortiz / vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  vcfsnpsphylipalignmentphylogeneticsnexusbinarysnappfastaoutgroupconvert-snpsvcf-filesphylogenetic-analysisvcf-formatphylip-matrixhaploiddiploidpolyploid
  Language:Python 265

• SAMtoBAM / PhasedDiploidGenomeAssemblyPipeline

  Using de-novo assembly and read-phasing to assemble reference-free diploid genomes

  diploidhaplotypeheterozygous-variantsphase-variantsphased-assemblies
  Language:R 19

• FJBiocode / ShortSequenceRastreator

  Short Sequence Rastreator allows genetic diversity analysis and preparation of input files for other softwares such as STRUCTURE, DARwin and SPAGeDi.

  ssrdiversitygeneticstructurespagediinput-fileslocuslocidiploidtriploidpyrusrosaceaednagenomicsequencemarker
  Language:Python 2

• marcusnizalvarez / LCVCFtools

  LCVCFtools is a program designed for working with VCF files generated from low-coverage whole genome sequencing

  variant-callinglow-coverage-sequencingdiploidgenotype-imputation
  Language:C++ 2

• TomMakesThings / Wright-Fisher-Simulator

  Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

  allele-frequenciesdiploidhaploidlinkage-disequilibriumpopulation-geneticssimulationwright-fisher-modelbioinformatics
  Language:Jupyter Notebook 1

• eldonb / evolution_diploid_population

  Evolution of a diploid population evolving under a form of viability selection and (optionally) sweepstakes reproduction

  evolutionselectiondiploid
  Language:CWeb 0