popgen

There are 2 repositories under popgen topic.

• sgkit-dev / sgkit

  Scalable genetics toolkit

  geneticsstatistical-geneticsgwaspydatastatgenpopgen
  Language:Python 213

• hardingnj / xpclr

  Code to compute the XP-CLR statistic to infer natural selection

  selectionpopgengeneticsbioinformatics
  Language:Python 84

• bodkan / slendr

  Population genetic simulations in R 🌍

  population-geneticspopgenrstatsspatial-statisticssimulations
  Language:R 52
• PopGen.jl

  BioJulia / PopGen.jl

  Population Genetics in Julia

  fstgeneticsgenomicsmicrosatellitespopgensnpsstructure
  Language:Julia 44

• bodkan / admixr

  An R package for reproducible and automated ADMIXTOOLS analyses

  popgenbioinformaticspopulation-geneticsrstats
  Language:R 26

• statgenlmu / coala

  A Framework for Coalescent Simulation in R

  coalescentdnaevolutionpopgenrstatssimulation
  Language:R 22

• Tom-Jenkins / utility_scripts

  Scripts for population genetics analysis

  rpopgen
  Language:R 19
• Kakapo

  GenomicsAotearoa / Kakapo

  Scripts and code for Kākāpō genomic data

  high-quality-genomespopgenpopulation-genetics
  Language:Jupyter Notebook 14

• DL42 / ParallelPopGen

  This is a package of APIs for performing population genetics simulations and analyses in parallel on the GPU.

  cudagpupopgenevolutionsimulation
  Language:Cuda 9

• mnavascues / ABCRFtutorial

  Crash Course on Approximate Bayesian Computation in Population Genetics

  tutorialabcpopgenstatistics
  Language:R 9

• aprilweilab / grgl

  Genotype Representation Graph Library

  c-plus-pluscomp-biopopgenpopulation-geneticspythonstatgenstatistical-genetics
  5

• jyanglab / g3tools

  An R packages for Genomics, quantGen, and popGen studies, especially for crop species.

  popgengenomicsblupquantgenpackage
  Language:R 5
• PopGenSims.jl

  pdimens / PopGenSims.jl

  Create population genetics simulations

  geneticsbreedingsimulationpopgencrossesmating
  Language:Julia 3

• bradduthie / Inbreeding

  Population genetic model of polygynous biparental inbreeding with no polyandry

  ecological-modelsevolutionary-algorithmsevolutionpopulationpopgen
  Language:C 2

• jyanglab / agro931-project

  A demo project for class AGRO/ASCI-931: population genetics

  teachingpopgenquantgenresearch
  Language:HTML 2

• ainacolovila / PopHumanVar

  PopHumanVar is an interactive app created with Shiny, that can be used for the functional characterization and prioritization of genomic variants

  bioinformaticsvisualizationshinyshiny-rdata-visualizationpopgenevolutionpositive-selection
  Language:R 1

• DL42 / SFS_DFE_categorical

  Calculates the maximum likelihood DFE for a SFS (selected) based on the categorical distribution and a reference SFS (neutral)

  popgensfsdfeselectionevolution
  Language:MATLAB 1

• esohkevin / CamPopStruct

  Fine-scale genetic structure in South Western Cameroon

  gwaspopgenpopulation-structure
  Language:R 1

• bajicv / popgen_intro

  Introduction to Human Population Genetics

  faststructureintroductionpcaplinkpopgenpopulation-geneticstutorial
  0

• kmehan / PopGen-Web-GUI

  popgengui
  Language:JavaScript 0

• r02ap19 / DFE_Wright-Fisher01

  An individual-based Wright-Fisher model with infinite site genomes and customizable distribution of fitness effects

  dfepopgen
  Language:C++ 0

• bodkan / globe-slendr-2023-03-22

  Simulation workshop for the Globe Institute, University of Copenhagen

  bioinformaticspopgenrsimulations
  Language:HTML

• mmaalvarez / deep_ancestry

  Tool for inferring global ancestry proportions in admixed samples using deep learning

  popgenpopulation-geneticsgeneticsgenomicsdeep-learningmachine-learningpythontensorflow
  Language:Python

• santiagosnchez / genetic_drift

  Shiny app with a genetic drift simulator

  animationdriftpopgenreactive-programmingshinysimulation
  Language:R

• uranus238 / RAD-MIG_tools

  tools for RAD-seq, MIG-seq processing and analysis

  snpsphylogeneticspopgen
  Language:R