phenotype
There are 1 repository under phenotype topic.
- human-phenotype-ontology
obophenotype / human-phenotype-ontology
Ontology for the description of human clinical features
Language:Makefile 279 ClarityNLP / ClarityNLP
An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
Language:Jupyter Notebook 105- Language:Python 57
spiros / chronological-map-phenotypes
Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
Planteome / plant-trait-ontology
Explore the Plant Trait Ontology on the Planteome site.
Language:Python 36phenopolis / phenopolis
An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
Language:JavaScript 33- Language:Python 26
- Language:Python 23
mgijax / mammalian-phenotype-ontology
Standard terms for annotating mammalian phenotypic data
Language:Makefile 19glasgowm148 / Phenotype
An Open Source Web Application for Genetic Data (SNPs) Data Crawling
Language:JavaScript 14FlyBase / flybase-controlled-vocabulary
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
Language:Shell 9XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and X. tropicalis.
Language:Makefile 8nimh-dsst / dataset-phenotypes
Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
Language:Python 7Human-Phenotype-Ontology / Human-Phenotype-Ontology.github.io
Human Phenotype Ontology Website
Language:CSS 6- Language:Java 5
NCBI-Hackathons / Complex_Phenogeno
Mapping complex genotypes to phenotypic subclusters
Language:Python 5bio-ontology-research-group / phenogocon
Method to predict phenotypes from functions
Language:Groovy 4The home of the Drosophila phenotype ontology
Language:Makefile 4Complex Phenotypes Team at the NCBI Hackathon
Language:HTML 4- Language:Shell 4
phenopackets / pxftools
A command line utility for operating over Phenotype eXchange Format (PXF) files.
Language:Scala 4- Language:Python 3
drseb / phenopposites
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
hms-dbmi / map-explorer
Use MAP to explore EHR data for individual patients.
Language:R 3- Language:Jupyter Notebook 2
binfalse / GEMtractor
Trim, extract, and convert GEMs
Language:Python 2Code to generate ontology annotated objects (e.g. HPO annotated patients)
Language:Java 2grimmlab / HeliantHome
HeliantHOME: a public and centralized database Home of a comprehensive collection of phenotypes for different Sunflower species
Language:Python 2manojmw / MultiOmics-ExomeSeq-Phenotype
Main Repository for my MASTER'S THESIS PROJECT
Language:Python 2:fish: Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
Language:Java 2- mMap
PeltzLab-Stanford / mMap
Computational tool for prioritizing the genetic candidates based on the protein functional and regulatory features
Language:Python 2 - Language:Python 2
theosanderson / malaria_phenotype_papers
Using a GPT3-based classifier to identify malaria papers reporting phenotypes
Language:Python 2ivanwilliammd / iderare-pheno
IdeRare Phenotype Analysis suite : Convert Indonesia SATUSEHAT terminology (SNOMED-CT, LOINC, ICD-10) to Rare Disease Terminology / Ontology (HPO, OMIM) and find the likelihood differential gene and disease explaining patient phenotype
Language:Jupyter Notebook 1mrueda / pheno-lens
Visualize and Perform Data Analytics on Phenotypic and Clinical Data Stored in GA4GH Standards and Beyond
Streamlined Searching in GA4GH-Standard Phenotypic and Clinical Data Repositories and Beyond
Language:Python 1
