aquaskyline

SOAPdenovo2

Next generation sequencing reads de novo assembler.

Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

LRSIM

10x Genomics Reads Simulator

Skyhawk

An Artificial Neural Network-based discriminator for validating clinically significant genomic variants

SOAPdenovo-Trans

SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.

SOAP3-dp

To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.

16GT

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

Clair

MICA-aligner

MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.

SOAPcoverage

aquaskyline.github.io

bioconda-recipes

Conda recipes for the bioconda channel.

Blockchain-Application-for-Biomedical-Data

vcf2diploid

personal genome constructor

WannaAln