pievos101

PopGenome

An Efficient Swiss Army Knife for Population Genomic Analyses in R

GNN-SubNet

Disease subnetwork detection with explainable Graph Neural Networks

Ensemble-GNN

Ensemble learning with graph neural networks for disease module discovery and classification

HC-fused

Multi-view hierarchical clustering in R

DFNET

Network-guided greedy decision forest for feature subset selection

kNN-Genome-Scans

Genome scans for selection and introgression based on k‐nearest neighbour techniques.

TreeSmoothing

Bayesian post-hoc regularization of Random Forests

TopKSignal

Effective signal reconstruction from multiple ranked lists via convex optimization

BlockFeST

Bayesian calculation of region-specific FST to detect local adaptation

cpath

Explaining black-box models through counterfactual paths and conditional permutations

Introgression-Simulation

Introgression Simulation using ms and seq-gen

BASIX

C/C++ toolset for R

fc-ensemble-gnn

Federated Ensemble-GNN for Feature Cloud

uRF

Unsupervised Random Forest-based Clustering

GraphXAI

GraphXAI: Resource to support the development and evaluation of GNN explainers

MaMi

Calibrated kNN Classification via Second-Layer Neighborhood Analysis

TAPIO

TopKLists

Inference, Aggregation and Visualization for Top-K Ranked Lists

WhopGenome

High-speed access to whole-genome variation and sequence data in R