OpenMendel's repositories
SnpArrays.jl
Compressed storage for SNP data
MendelImpute.jl
OpenMendel package for haplotyping and imputation
MendelIHT.jl
Iterative hard thresholding for l0 penalized regression
OrdinalGWAS.jl
Genome-wide association studies (GWAS) for ordered categorical phenotypes
VCFTools.jl
Julia utilities for handling VCF files
OpenMendel.github.io
The main website for the OpenMendel project.
OrdinalMultinomialModels.jl
ordered multinomial models
MendelPlots.jl
Julia package for plotting results from GWAS
VarianceComponentModels.jl
Utilities for fitting and testing variance component models
ASHG-OpenMendelWorkshop-2020-Oct
OpenMendel tutorials for ASHG Workshop
ADMIXTURE.jl
Julia wrapper of the ADMIXTURE program for estimating ancestry
LangeSymposium-ProgrammingWorkshop-20202022
OpenMendel tutorials for Lange's Symposium Programming Workshop
MendelBase.jl
MendelBase contains the base functions of OpenMendel.
MendelGWAS.jl
This package performs standard Genome-wide Association Studies.
TraitSimulation.jl
Simulate phenotypes from any GLM model
ClassicMendel
Official Mendel package distribution
MendelGeneticCounseling.jl
This analysis option performs risk calculations for genetic counseling problems.
MendelLocationScores.jl
This analysis option maps a trait via the method of Location Scores, i.e., multipoint linkage analysis.
MendelSearch.jl
MendelSearch is a program for function optimization. Search permits bounds and linear constraints to be imposed on parameters and, in statistical applications, computes asymptotic standard errors and correlations of parameter estimates.
MendelTwoPointLinkage.jl
This analysis option performs two-point linkage analysis.
MendelKinship.jl
This analysis option computes kinship and other identity coefficients.
QuasiCopula.jl
A Flexible Quasi-Copula Distribution for Statistical Modeling