phylogenetic-placement

There are 0 repository under phylogenetic-placement topic.

• usher

  yatisht / usher

  Ultrafast Sample Placement on Existing Trees

  sars-cov-2phylogeneticsmaximum-parsimonyushergenome-browserphylogenetic-placement
  Language:C++ 117

• lczech / gappa

  A toolkit for analyzing and visualizing phylogenetic (placement) data

  c-plus-plusphylogeneticsphylogenetic-dataphylogenetic-placementevolutionary-placementplacementgenesisgappa
  Language:C++ 57

• phylo42 / PEWO

  Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

  benchmarkingmetabarcodingmetagenomicsphylo-kmersphylogenetic-placementplacementsnakemaketaxonomic-classificationworkflow
  Language:Python 11

• Grice-Lab / HmmUFOtu

  An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

  taxonomy-assignmentjplacemixture-modelphylogenetic-placementhmmotudirichlet-process-mixturesphylogenetics
  Language:C++ 10

• phylo42 / RAPPAS

  Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

  placementphylogenetic-placementmetagenomicsmetabarcodingphylogeneticsgenetic-markerskmersphylo-kmerstaxonomic-classification
  Language:Java 9

• nf-core / phyloplace

  nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.

  nextflownf-corepipelineworkflowphylogeneticsphylogenetic-placementevolutionsequence-classificationtaxonomy-assignmentevolutionary-tree
  Language:Groovy 5

• lczech / thesis

  My dissertation / PhD thesis

  phylogenetic-placementphylogeneticsthesis
  Language:TeX 4

• naturalis / barcode-constrained-phylogeny

  Pipeline for building topologically-constrained phylogenies from DNA barcode data

  dna-barcodingmetabarcodingphylogenetic-diversityphylogenetic-placementphylogenetics
  Language:Python 1

• fridalp / eutardigrade_eDNA

  Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"

  ednamaximum-likelihoodmetabarcodingphylogenetic-placement
  Language:R 0

• wiegertj / BAD

  Tool for estimating the difficulty of phylogenetic placements

  boosting-ensemblephylogenetic-placementphylogeneticsshapley-value
  Language:Python