biohackeu20

There are 3 repositories under biohackeu20 topic.

• V-pipe

  cbg-ethz / V-pipe

  V-pipe is a pipeline designed for analysing NGS data of short viral genomes

  ngssnakemakecondabiohackeu20virussequencingbioinformaticsbioinformatics-pipelinebiohackcovid20sars-cov-2sarscov2hivgenomicsbiohackeu21biohackeu22
  Language:Jupyter Notebook 126

• edamontology / edamontology

  EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.

  edamontologyweb-ontology-languageidentifiertopicdataoperationformatbiohackeu20data-analysisdata-identifierstopicsscienceedam-ontology
  Language:Shell 115

• BioSchemas / specifications

  Issue tracker, technical wiki, and example markup

  biohackeu20biohackeu19biohackathon-europe
  Language:HTML 51

• ResearchObject / ro-crate-py

  Python library for RO-Crate

  metadataro-crateresearchobjectgalaxycwlbiohackcovid20biohackeu20
  Language:Jupyter Notebook 42

• research-software-ecosystem / content

  A metadata commons to store research software metadata

  biohackeu20
  40

• elixir-europe / BioHackathon-projects-2020

  This repository is meant for the participants of the BioHackathon hosted in Barcelona in Nov 2020 to share ideas, create issues, manage projects, publish materials, create code, etc.

  biohackeu20
  Language:HTML 20

• BioSchemas / bioschemas.github.io

  Files for the Bioschemas website.

  biohackeu20biohackeu19biohackathon-europe
  Language:HTML 16
• galaxy

  common-workflow-lab / galaxy

  Fork of Galaxy (http://galaxyproject.org/) attempting to implement the CWL spec.

  bh2019europebiohackeu20
  Language:Python 10

• NuriaQueralt / covid19-epidemiology-ontology

  Epidemiology and monitoring ontology for COVID-19

  biohackeu20ontologyepidemiologycovid-19owlobofoundryaxiom-patternsobo
  Language:TeX 6

• bio-tools / biotoolsConnect

  Adaptors for content exchange between bio.tools and community projects.

  biohackeu20
  Language:Python 4

• 3D-Beacons / 3d-beacons-client

  Implementation of the 3D-Beacons client (local 3D model server)

  biohackeu20python
  Language:Python 3

• HW-SWeL / BMUSE

  Bioschemas Mark Up Scraper and Extractor

  biohackathon-europebiohackeu20
  Language:HTML 3

• JervenBolleman / handlegraph4jRDF

  Handlegraph RDF writers in java for working with variation graph genome data.

  biohackeu20bioinformaticsdnafaldordfvariation-graphvg
  Language:Java 3

• JervenBolleman / rs-handlegraph-ffi

  Make rs-handlegraph available for use in other languages by generating C header file and a simple lib

  biohackeu20handlegraphdnabioinformaticsvariationgraphs
  Language:Rust 3

• JervenBolleman / sapfhir

  Join genomic variation graphs with public data or internal medical data e.g. FHIR. by having a FAIR data access, using W3C sparql as a standard protocol.

  rdfgraph-databasesparqlbiohackeu20
  Language:Java 3

• biohackrxiv / bhxiv-metadata

  Query backend and display HTML

  biohackeu20
  Language:Ruby 2

• babelomics / MechACov

  covid19-datametaanalysismetanalysisreactjsbiohackeu20
  Language:TypeScript 1

• collaborativebioinformatics / GrOMOP

  Genome Graphs into OMOPOMICs

  biohackeu20
  Language:HTML 1

• danielabutano / intermine-R2RML-mapping

  biohackeu20
  Language:Java 1

• JervenBolleman / handlegraph4j

  Handlegraph API in java for working with variation graph genome data.

  biohackeu20bioinformaticsgenomicsvariationgraph
  Language:Java 1

• JervenBolleman / handlegraph4jGFA

  Handlegraph based GFA(1+2) parsers in java for working with variation graph genome data.

  biohackeu20gfa-format
  Language:Java 1

• JervenBolleman / rs-spodgi

  biohackeu20
  Language:Rust 1

• kg-subsetting / biohackathon2020

  Contents/experiments from biohackathon 2020

  biohackeu20shexwikidata
  Language:Jupyter Notebook 1

• UniBioDicts / vsm-pubdictionaries

  A VSM-dictionary that communicates with PubDictionaries REST API

  biohackeu20vsm-dictionaryontology-searchvsmdictionarytermspubdictionaries
  Language:JavaScript 1

• yocra3 / epimutacions

  Package to detect epimutations from DNA methylation data

  biohackeu20
  Language:R 1

• zbmed-semtec / BioHackOutcomes

  BioHackathon project to define and follow up BioHackathon projects

  biohackeu20
  Language:Jupyter Notebook 1

• JervenBolleman / handlegraph4j-simple

  Simple implementation of an in memory handlegraph in java for testing purposes

  biohackeu20
  Language:Java 0

• matdillen / 33_molseq

  biohackeu20
  Language:R 0

• wna-se / markdown-it-py

  Markdown parser, done right. 100% CommonMark support, extensions, syntax plugins & high speed. Now in Python!

  biohackeu20
  Language:Python 0

• wna-se / the-turing-way

  Host repository for The Turing Way: a how to guide for reproducible data science

  biohackeu20
  Language:TeX 0

• ds-wizard / bh2020-report

  BioHackathon Europe 2020 report for DSW project

  biohackeu20biohackathon-europereport
  Language:TeX

• ds-wizard / h2020-dmp-template

  Horizon 2020 DMP template for DSW

  biohackeu20
  Language:Jinja

• intermine / intermine-R2RML-mapping

  biohackeu20
  Language:Java

• JervenBolleman / intermine-R2RML-mapping

  biohackeu20
  Language:Java

• JervenBolleman / rs-handlegraph

  Rust implementation of VG handle graph

  biohackeu20
  Language:Rust

• JervenBolleman / sapfhir-server

  Server/docker image for sapfhir using spring-boot and docker image

  biohackeu20docker-imagerdfsparqlspring-boot
  Language:Java