ryansmcgee

seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

neuronalnetworks

pycrobe

A simple package for simulations of microbial growth experiments with realistic sources of error.

barcode-bias

Code and data accompanying McGee et al. "Improving the accuracy of bulk fitness assays by correcting barcode processing biases." bioRxiv (2023).

covid-testing-vaccinated-population

Supporting data and code for McGee et al. "Proactive testing in a partially vaccinated population." (2021).

covid19-schools

Code and data associated with "Model-driven mitigation measures for reopening schools during the COVID-19 pandemic." (2021)

cost-information-selection

Data accompanying McGee et al. "The cost of information acquisition by natural selection." bioRxiv (2022).

ecoevocrm

Computational frameworks for extended consumer-resource models of eco-evoutionary community dynamics.

python320kincaid

Python study group depository