epidemic-simulations
There are 4 repositories under epidemic-simulations topic.
- seirsplus
ryansmcgee / seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Language:Python 672 rajeshrinet / pyross
PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross
Language:Jupyter Notebook 167- covid19-sir
lisphilar / covid19-sir
CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
Language:Python 112 petroniocandido / COVID19_AgentBasedSimulation
COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions
Language:Python 86- Pandemic-Simulator
IvanHornung / Pandemic-Simulator
Simulate a pandemic with artificial life objects.
Language:Java 67 prajwalsouza / Epidemic-Simulation
An interactive inspired by 3Blue1Brown's 'Simulating an Epidemic' video.
Language:HTML 60LucaDiba / epidemic-simulator
A HTML/JavaScript simulator for an epidemc on a population
Language:JavaScript 23matsim-org / matsim-episim-libs
Epidemic simulation for MATSim
Language:Java 23- Language:JavaScript 21
wesdoyle / python_epidemic_simulation
A crude simulation of an epidemic in Python with pygame visualization
Language:Python 20MohamedHmini / D-PandiSIM
distributed pandemics simulator, uses the power of spark to generate huge bulks of contact-tracing data.
Language:Jupyter Notebook 17healthbadge / episimmer
Episimmer is an Epidemic Simulation Framework for Decision Support. It is a highly flexible system that can be easily configured to help take decisions during an epidemic in closed communities like university campuses and gated communities.
Language:Jupyter Notebook 16- covid-19
p-j-r / covid-19
Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.
Language:Jupyter Notebook 15 DataForScience / epidemik
Compartmental Epidemic Models in Python
Language:Python 14- MetaWards
metawards / MetaWards
MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling
Language:Python 13 - CATE
theLongLab / CATE
A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.
Language:Cuda 13 Immodal / simulating-an-epidemic
Based on Simulating an Epidemic by 3Blue1Brown, this interactive simulation lets the user explore their ideas experimentally and quantitatively in a limited fashion, and to understand the drastic effects minor changes in behaviour can have in our fight against any disease.
Language:JavaScript 12nwlandry / hypercontagion
Library for epidemics on hypergraphs
Language:Python 12- Language:Python 9
- BranchingProcessSimulator
plamentrayanov / BranchingProcessSimulator
Matlab Simulator of Continuous-time Multi-type Branching Processes in Random Environment. (UPDATE: includes examples for modelling the coronavirus epidemics (COVID-19, SARS-CoV-2)))
Language:MATLAB 9 epiverse-trace / epidemics
A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
Language:R 8- CE-ABC
americocunhajr / CE-ABC
CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.
Language:MATLAB 7 epiforecasts / bpmodels
[RETIRED. Use the epichains package instead]. Methods for simulating and analysing the sizes and lengths of chains from branching process models
Language:R 7alaradirik / complex-networks
A collection of complex networks assignments
Language:Jupyter Notebook 6Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models
Language:R 6SamuelBrand1 / KenyaCoV
This repo contains the source code KenyaCoV, a simulation package for forecasting SARS-CoV-2 transmission in Kenya.
Language:Jupyter Notebook 6savithru-j / COVID-19-SL
Interactive tool for modeling the evolution of COVID-19 in Sri Lanka
Language:JavaScript 6JBris / sir-agent-based-modelling
Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.
Language:Jupyter Notebook 5lt-shy-john / covid19-vaccine-game-theory
Game theoretical modelling of COVID-19 vaccine adoption
Language:Python 5TunaCuma / Viral-Epidemic-Simulator
The Viral Epidemic Simulator is an interactive tool designed to model the spread of viruses under various conditions and scenarios. Users can configure parameters such as virus type, initial infection count, vaccination rates, and curfew settings to observe how these factors influence the epidemic's progression.
Language:Java 5hygeng / humanflow
Official implementation for UIC-22 "HMES: A Scalable Human Mobility and Epidemic Simulation System with Fast Intervention Modeling"
Language:C++ 4- epidemic-modeling
marcpinet / epidemic-modeling
🦠Python script that simulates a pandemic using moving dots with tweakable parameters and then generates a graph according to obtained values. Made as part of a school project.
Language:Python 4 QuanticPony / Analysis-of-effectiveness-of-lockdown-policies-for-desease-containment
Trabajo de Fin de Grado de FĂsica 2022
Language:Python 4- Language:R 4
Venn1998 / ComplexNetworks
Simple projects to understand concepts from the Complex Network course at UOC: Structural Descriptors, Models of Complex Networks, Community Detection, Dynamics in CN (Epidemic simulation)
Language:Jupyter Notebook 4- Language:Python 3
