sarscov2

There are 0 repository under sarscov2 topic.

hodcroftlab / covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
covid-19 covid19 mutation mutation-distribution nextstrain sars-cov-2 sarscov2 tracking variants
Language:Python 315
V-pipe
cbg-ethz / V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
ngs snakemake conda biohackeu20 virus sequencing bioinformatics bioinformatics-pipeline biohackcovid20 sars-cov-2 sarscov2 hiv genomics biohackeu21 biohackeu22
Language:Jupyter Notebook 125
maximilianh / multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
sarscov2 sars-cov-2 gisaid-format gisaid-upload gisaid-xls ncbi-ftp genbank tsv ena meta-data fasta gisaid-uploader ncbi
Language:Python 34
erdidogan / SARS-CoV-2
Covid19 UI | Local Data Tracker & Compare the number of deaths in Countries
countries covid-19 covid19-data sarscov2
Language:Vue 14
mrc-ide / sarscov2-b.1.1.7
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)
sarscov2 england transmission insights epidemiology genetic-data paper phylodynamics bayesian-inference
Language:HTML 4
COVID-19-GR-DATA
estamos / COVID-19-GR-DATA
SARS-CoV-2 data from Greece | GR | EN
covid-19 covid19-data covid-2019 covid-data coronavirus coronavirus-info coronavirus-analysis sars-cov-2 sarscov2 wuhan-coronavirus-outbreak wuhan-virus wuhan-coronavirus wuhan-pneumonia covid19 covid-virus greece greek
3
heznanda / scrnaseq-hybrid-cov2
Single Cell RNA Sequencing with Hybrid Pipeline
cell-ranger-count genes seurat hybrid-genome-reference mitochondria-genes covid-19 sarscov2 sars-cov-2
Language:R 1
HULPopentrons / RNA_extraction_OT2opentrons
Automatic RNA extraction protocol in OT-2 system (Opentrons)
microbiology sars-cov-2 sarscov2 rna rna-extraction opentrons
Language:Python 1
swarna0712 / Covid-19-Sentimental-Ananlysis-Python-Datascience
Covid-19 Sentimental Analysis of Twitter Dataset using Python and Tweepy Library
covid covid-19 covid19 covid19-data datascience dataset matpl matplotlib numpy pandas pandemic pandemic-analysis python3 sars-cov-2 sarscov2 seaborn tweepy twitter twitter-sentiment-analysis
Language:Jupyter Notebook 1
ArthurVM / TreeMer
A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.
hierarchical-clustering-trees distance sarscov2 bioinfo phylogenetic-trees genome-analysis kmer-composition
Language:Python 0
emvivas / sarscov2origin
Analysis of the origin of SARS-COV 2, how could this pandemic have started?
analytics coronavirus covid19 dna genome levenshtein ncbi needleman-wunsch r rna sarscov2 virus
Language:HTML 0
QIDSOD / QIDSOD-documentation
Documentation related to the project "Quantifying the Impact of Data Sharing on Outbreak Dynamics" (QIDSOD)
covid-19 covid19 data-integration data-science data-sharing datasharing documentation epidemiological-investigation epidemiology next-pandemic outbreak outbreak-data-analysis outbreak-dynamics outbreak-severity outbreaks public-health sars-cov-2 sarscov2
0
ykursadkaya / covid19-turkey-api
COVID-19 Turkey API
turkey covid-19 covid19 covid-api covid19-turkey covid19-turkey-api covid-turkey sarscov2
Language:Python 0
jfcaro / Vacunacion_COVID_19_ESP
Vacunacion COVID19 España
covid covid-19 covid19 sarscov2 vacunacion
Language:Jupyter Notebook
MirandaBeatriz / bioinformatics-pipeline-to-assist-in-the-assembly-and-analysis-of-SARS-COV-2
Trabalho de conclusão de curso, com o objetivo de desenvolver um pipeline que auxilie decisões de estudos epidemiológicos, além de possíveis análises e diagnósticos laboratoriais.
pipeline sarscov2
Language:Shell
ykursadkaya / covidbot
COVID-19 Turkey API and Telegram Bot
covid-19 turkey sars-cov-2 sarscov2 covid-api covid19-turkey covid-19-turkiye covid-19-turkey
Language:Python