urmi-21

pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

COVID-19-RNA-Seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets

orfipy

Fast and flexible ORF finder

MetaOmGraph

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

PLncPRO

A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)

COVID-DEA

African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures

csvtoxl

Easily convert csv/tsv to excel (xlsx) taking care of gene names or other data vulnerable to auto conversion by MS-Excel

COVID-biorxiv

Flexible query for biorxiv and medRxiv COVID-19 collection

covid-quantification

A pipeline to quantify COVD-19 infected RNA-Seq samples

Human_orphan_genes

A pan-tissue pan-cancer compendium of human orphan genes

sra-pyutils

Easy SRA metadata

bioconda-recipes

Conda recipes for the bioconda channel.

COVID_RNASeq_workshop_2021

Hands on workshop for RNA-Seq analysis using pyrpipe, conda and snakemake

hap.py

Haplotype VCF comparison tools

hello-julia

Trying out Julia language

maize_pyrpipe

microarrayDataProcessing

mikado_compare_test

mikado_compare_test

mikado_test

Testing mikado tool

ORIS

ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes

orphan-prediction

methods for orphan gene prediction paper optimization

phylostratr

An R framework for phylostratigraphy

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

riboseq

scripts used for riboseq analysis

rna-seq-kallisto-sleuth

A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.

RNA-Seq-Normalization-Notes

My notes on RNA-Seq Normalization methods

scalable_synteny

Synteny analysis pipeline implemented in a scalable, parallelized manner

urmi-21

urmi-21.github.io

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

urminder_singh_resume

My Résumé and CV