virus-evolution
There are 2 repositories under virus-evolution topic.
neherlab / SARS-CoV-2_variant-reports
Informal summaries of notable SARS-CoV-2 lineages
enginestein / Virus-Collection
The best virus collection you will find, ever.
Language:C++ 67mtisza1 / Cenote-Taker2
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
Language:Shell 57nextstrain / mpox
Nextstrain build for mpox virus
Language:Python 39mpxv-lineages / lineage-designation
Official place for proposals and details around monkeypox virus lineage designations
Language:Python 19giffordlabcvr / gluetools
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
Language:Java 10- Language:Python 4
PathoGenOmics-Lab / VIPERA
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
Language:Python 3- Language:Python 2
CoVaRR-NET / duotang
Scripts and data for the CoVaRR-Net Pillar 6 notebook
Language:HTML 1damien-piedanna / virus-cellular-automaton
Automate Cellulaire pour modéliser la propagation de Virus
Language:Python 1A GLUE project for SARS-COV2, focused on genetic variation.
- Flavivirus-GLUE
A GLUE project for comparative genomic analysis of flaviviruses
Language:JavaScript 1 A GLUE project for hepatitis B virus (HBV).
Language:JavaScript 1A GLUE project for Hepatitis C virus (HCV)
Language:F* 1Extension to HCV-GLUE project, to analyse binding sites for HCV neutralising antibodies.
Language:JavaScript 1Extension to HBV-GLUE - incorporates all sequences from GenBank.
- Parvovirus-GLUE
A GLUE project for comparative genomic analysis of parvoviruses
Language:JavaScript 1 imadedd / COVID19Algeria
This repository contains datasets about Coronavirus COVID-19 in Algeria with daily updates and virus evolution in the country by province, date, and other criteria that are lacking in official resources and may help researchers or doctors to analyse the disease and maintain a good state of it changes.
Language:R 1sequence-review / sars-cov-2
Repository to discuss SARS-CoV-2 sequence quality
VirusSpreadSimulator / PPS-22-virsim
VirSim: a simulation tool for the spread of a Virus within a population
Language:Scala 1- CRESS-GLUE
A GLUE project for comparative genomic analysis of circular Rep-encoding single-stranded DNA (CRESS DNA) viruses
Language:JavaScript 0 justNo4b / GenomeDrawing
Small python tool for in-scale drawings viruses genome scemes
Language:Python 0Place to discuss mpox virus sequences
0Web application for COV-GLUE
Language:JavaScriptA GLUE project for Deltaretroviruses
Language:JavaScriptA GLUE project for comparative genomic analysis of filoviruses
Language:HTMLWeb application for HBV-GLUE
Language:HTML- Hepadnaviridae-GLUE
A GLUE project for hepadnaviruses (family Hepadnaviridae)
Language:JavaScript A GLUE project for Hepatitis E Virus (HEV)
Language:HTMLA GLUE project for human herpesvirus 6 (HHV6)
Language:HTMLA GLUE project for Lentiviruses (genus Lentivirus)
Language:JavaScriptExtension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
Language:JavaScriptExtension to RABV-GLUE capturing NCBI data.
Language:JavaScriptHCV drug resistance extension based on collaboration with PHE.
Language:HTMLpublic interactive website layered on top of RABV-GLUE / NCBI-RABV-GLUE projects.
Language:HTML