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Assembly and intrahost/low-frequency variant calling for viral samples
Exploit Huawei ONT device, only support r019. You need to compile kernel module getshell.ko for r018 or r017 by yourself.
start shell scripts on hs8145x6 with full root privilege
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data
FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Benchmarking for long-reads assembler
Get L. pneumophila ST from long-read or hybrid assemblies.
Unofficial client library to get data from Huawei router
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
Projeto para Provisionar ONU/ONT na OLT Nokia
A quick guide to create Docker images for the Scrappie, Flappie, and Bonito basecallers by ONT.
Parses and exports GPON Stats from ONT through Rest API (JSON format)
The analysis of shotgun metagenomic sequencing data generated from Oxford Nanopore Technology (ONT).
Analyses of Penter, Borji & Nagler et al., 2023
A simple regular expression based method for measuring telomere length from long-read sequencing
Build highly accurate transcripts from long-read RNA data