epidemic-model
There are 6 repositories under epidemic-model topic.
- seirsplus
ryansmcgee / seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Language:Python 652 - graph-theory
je-suis-tm / graph-theory
Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Randomized Distributed, Vizing, Topological Sort, DFS, BFS
graph-theorymaximal-cliquesepidemic-modelsir-modeldynamic-systemrandom-graphagent-based-modelingcompartmental-modelcomplex-networkdynamic-networkagent-based-simulationminimum-spanning-treesminimum-spanning-treecomplex-systemsspatial-modelsbianconi-barabasibarabasi-albertsars-cov-2watts-strogatzgraph-coloringLanguage:Jupyter Notebook 328 YiranJing / Coronavirus-Epidemic-COVID-19
👩🏻⚕️Covid-19 estimation and forecast using statistical model; 新型冠状病毒肺炎统计模型预测 (Jan 2020)
Language:Jupyter Notebook 243huanghuidmml / epidemicTextMatch
天池大赛疫情文本挑战赛线上第三名方案分享
Language:Python 228- covid19-severity-prediction
Yu-Group / covid19-severity-prediction
Extensive and accessible COVID-19 data + forecasting for counties and hospitals. 📈
Language:Jupyter Notebook 227 - covid19-sir
lisphilar / covid19-sir
CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
Language:Python 108 petroniocandido / COVID19_AgentBasedSimulation
COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions
Language:Python 80chrism0dwk / wuhan
Modelling of the nCoV-2019 outbreak in Wuhan, China, by Jon Read, Jess Bridgen, and Chris Jewell at Lancaster University.
Language:R 74- covid19-analytics
funcional-health-analytics / covid19-analytics
Analysis of the COVID19 outbreak in Brazil mainly through epidemic and hospitalization models, by the Health Analytics and Prospera consulting business units of Funcional Heatlh Tech.
Language:Jupyter Notebook 22 scc-usc / ReCOVER-COVID-19
Data-driven COVID-19 forecasts and detection of unreported cases
Language:HTML 21Emory-Melody / awesome-epidemic-modeling-papers
Papers about deep learning in epidemic modeling.
deepkashiwa20 / MepoGNN
[ECMLPKDD22] MepoGNN: Metapopulation Epidemic Forecasting with Graph Neural Networks
Language:Python 14- MetaWards
metawards / MetaWards
MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling
Language:Python 13 AlgebraicJulia / Structured-Epidemic-Modeling
Results and software for our paper on structured epidemic modeling
Language:Jupyter Notebook 12- Language:Python 9
GiulioRossetti / Social-Network-Analsysis-Laboratory
Docker container exposing a preconfigured python environment for Social Network Analysis
Language:Dockerfile 9adbecker / tsiR
tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics
Language:R 7mbkoltai / RSV-resurgence-model
Code for modeling RSV resurgence following contact restrictions
Language:R 6sjijon / estimate-emergence-from-data
Code for reproducing the results from the preprint "Using early detection data to estimate the date of emergence of an epidemic outbreak".
Language:R 6UNGlobalPulse / UNGP-settlement-modelling
Agent-based model for simulating the spread of epidemics in refugee and IDP settlements. Adapted from the JUNE framework.
Language:Jupyter Notebook 6- Language:Vue 5
JBris / sir-agent-based-modelling
Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.
Language:Jupyter Notebook 5lt-shy-john / covid19-vaccine-game-theory
Game theoretical modelling of COVID-19 vaccine adoption
Language:Python 5- Language:JavaScript 4
JuliaEpi / MathepiaModels.jl
Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl
Language:Julia 4MatteoM95 / Network-Dynamics-and-Learning
Homework and exercises from course Network Dynamics and Learning
Language:Jupyter Notebook 4oliviergimenez / fitODEswithOpenBUGS
Illustrate how to fit ODEs to time-series data in OpenBUGS with R
QuanticPony / Analysis-of-effectiveness-of-lockdown-policies-for-desease-containment
Trabajo de Fin de Grado de Física 2022
Language:Python 4- Language:R 4
chrisvoncsefalvay / differential-social-distancing-game
Statistical dynamics of social distancing in SARS-CoV-2 as a differential game
Language:Jupyter Notebook 3- epidemic-modeling
marcpinet / epidemic-modeling
🦠 Python script that simulates a pandemic using moving dots with tweakable parameters and then generates a graph according to obtained values. Made as part of a school project.
Language:Python 3 pourmalek / CovidVisualizedGlobal
Combine and visualize predictions of international periodically updated COVID-19 pandemic models for the global level and six WHO regions
Language:Stata 3DataForScience / CoVID19
A Data Driven Approach to Understanding COVID-19 with NetworkX
Language:Jupyter Notebook 2doscsy12 / network_sci_analysis
Network data analysis using networkx, and gephi for visualisations.
networkxgraph-theorycomplexity-sciencenetwork-analyticsnetwork-robustnessairline-networkfailuresattacksnetwork-analysisepidemic-modelsir-modelvaccination-strategypandemic-simulatorepidemic-simulationsmonte-carlo-simulationviral-marketingsocial-networkcommunity-detectiongephi-visualizationsepidemiology-analysisLanguage:Jupyter Notebook 2nehalmuthu / Covid-Simulation-in-Federated-Environment
COVID prediction and simulation based on mobility data in federated environment
Language:Jupyter Notebook 2
