epidemiology-analysis
There are 5 repositories under epidemiology-analysis topic.
- seirsplus
ryansmcgee / seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Language:Python 650 - zEpidLanguage:Python 131
- MetaWards
metawards / MetaWards
MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling
Language:Python 13 - covid-19
p-j-r / covid-19
Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.
Language:Jupyter Notebook 13 edoardottt / COVID-19
Info/Data (global/italy) about COVID-19. PR welcome for other countries.
Language:Python 8epicollect / epi-collect
🌏🌎🌍 Liberate Google Takeout location data for epidemiological research and local contact tracing https://epi-collect.org
Language:TypeScript 7JoeRothwell / Molecular-epi
Data analysis for colorectal cancer projects, mainly using metabolomics data.
Language:R 5lt-shy-john / covid19-vaccine-game-theory
Game theoretical modelling of COVID-19 vaccine adoption
Language:Python 5daniellybx / curso_r_asis
Curso Intermediário de R para análise de situação de saúde
Language:R 4AKU-CITRIC-Center-for-Bioinformatics / ncov
Genomic Epidemiology of SARS-CoV-2 in Pakistan
doscsy12 / network_sci_analysis
Network data analysis using networkx, and gephi for visualisations.
networkxgraph-theorycomplexity-sciencenetwork-analyticsnetwork-robustnessairline-networkfailuresattacksnetwork-analysisepidemic-modelsir-modelvaccination-strategypandemic-simulatorepidemic-simulationsmonte-carlo-simulationviral-marketingsocial-networkcommunity-detectiongephi-visualizationsepidemiology-analysisLanguage:Jupyter Notebook 2nunesma / Health-analytics
Data analysis focusing on health problems
Language:R 2scab-unam / dam_COVID-19
Data analysis and modeling of the COVID-19 propagation dynamics
Language:Jupyter Notebook 2ashm97 / Gaussian-Processes-for-Fitting-Epi-Curves
Fitting GPs to count data for non-linear regression of epi-curves
Language:Python 1Repositório para o grupo de estudos R voltado para o R na área da Saúde.
Language:R 1ecsendmail / AgentBasedModel
CovidSIM Agent-Based Model
Language:HTML 1Scripts for analysis of metabolomics data relating to nutrition, health and disease in the EPIC study.
Language:R 1Lauraquiroga / SEIRSModel
A SEIRS-NIMFA compartmental epidemiological model implementation adapted for the analysis of IoT network malware propagation
Language:Python 1- Language:R 1
srhoffma / non_binary_exposure_IPW
Inverse probability weighting for non-binary exposures. Simple example in Excel and SAS.
Language:Rich Text Format 1ssiddhantsharma / simulate-epi
An epidemic stimulator, developed and built by brute force to learn more on biological systems.
Language:JavaScript 1tzxb018 / covid_analysis
This python application takes the information from the spread of COVID-19 in the US and determines the effectiveness of the Stay At Home Orders for each state. To analyze the effectiveness, I used a cubic least square polynomial and the SIR model and compared these two models before and after date the stay at home orders were issued.
Language:Python 1BlankTiger / SEIRD_model
Educational tool used to visualize and solve the SEIRD epidemiological model with vaccination functionality. Allows the user to save results, parameters and more.
Language:Python 0Educational tool that aims to provide an easy way of interacting with the basic epidemiological model SIR. Can also show how it would interact with the basic idea of vaccinations and an idea of losing immunity over time (second wave of infections).
Language:Python 0Curso de nível intermediário aplicando o R e o RStudio ao cotidiano da Vigilância em Saúde para análise de dados temporais.
Language:R 0Projeto de machine learning para predição de taxas de internação por CSAB e clusterização para dimensionamento de ESF.
Language:R 0elynch21 / Public-Health-490KR-Epidemiologic-Data-Management-and-Analysis
Undergraduate Course Work from Public Health 490KR Epidemiologic Data Management & Analysis, Taught by Professor Katherine W. Reeves, PhD, MPH
Language:Stata 0joao-med / syphilis_juizdefora
A ecological time series study about syphilis in the city of Juiz de Fora, in Brazil
Language:R 0jonathanstathakis / epidemiology-statistical-analysis-report
A short EDA project on the results of a fictional trial of a HbA1c2 treatment. Written in R with tidyverse, table1, and other packages.
Language:HTML 0LinoSergio / COVID-19-mapping
Epidemiological project to visualize the status of COVID-19 in Sergipe (Brazil)
Language:R 0stopsack / rifttable
rifttable: Results Tables to Bridge the Rift Between Epidemiologists and Their Data
Language:R 0arinbasu / uc-shss-hlth460
This is a repository for the research methods course taught at the University of Canterbury. All study materials, exercises, readings, and data for analyses are kept here.
nicolas-ayala-aldana / Model-Risk
Ecological study for COVID-19 using aggregate data of Catalonia using RStudio
ruizdata / epi_navajo
Streamlined and reproducible code for generating daily reports on tribal COVID-19 risks
Language:Rseby-sbirna / Epidemiological-Modeling-and-Infection-Spread-Insights-of-COVID-19
This repository contains reproducible research on an epidemiological model for understanding COVID-19 spreading rates, as part of the DTU Data Science course 22100: R for Bio Data Science
Language:R
