Beast code in Giters

Yatish Turakhia's repositories

usher

Ultrafast Sample Placement on Existing Trees

Language:C++MIT117 11 151

darwin

Darwin: A co-processor for long read alignment

Language:C++MIT15 20

strain_phylogenetics

Tools for analyzing and comparing SARS-CoV-2 phylogenies

Language:C++MIT8 3 3

hcoErosions

Language:PythonMIT3 2 2

Darwin-WGA

Co-processor for whole genome alignment

Language:VerilogMIT200

shasta

De novo assembly from Oxford Nanopore reads.

Language:C++NOASSERTION200

SegAlign

A Scalable GPU System for Pairwise Whole Genome Alignments

Language:C++MIT000

aws-fpga

Official repository of the AWS EC2 FPGA Hardware and Software Development Kit

Language:VHDLNOASSERTION000

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell000

coursera-sdaccel-theory

Source codes used during the Coursera course titled "Developing FPGA-accelerated cloud applications with SDAccel: Theory"

MIT000

coveme

Docker environment for COVEME

GPL-3.0000

cppbestpractices

Collaborative Collection of C++ Best Practices

NOASSERTION000

dozeu

SIMD-parallel BLAST X-drop DP on sequence graphs

Language:C000

gprof2dot

Converts profiling output to a dot graph.

Language:PythonLGPL-3.0000

hal

Hierarchical Alignment Format

Language:C++NOASSERTION000

kent

UCSC Genome Browser source tree. Stable branch: "beta".

Language:CNOASSERTION000

kubernetes

Various snippets and tooling to use a kubernetes cluster

Language:Makefile000

ncov

Nextstrain build for novel coronavirus SARS-CoV-2

Language:PythonMIT000

pycogent

PyCogent: Official repository for software and unit tests

Language:Python000

riscv-boom

SonicBOOM: The Berkeley Out-of-Order Machine

Language:ScalaBSD-3-Clause000

VEME2021

000

vim

Language:Vim Script010

Vitis-HLS-Introductory-Examples

Language:C++NOASSERTION000