global-health
There are 8 repositories under global-health topic.
- openemr
openemr / openemr
The most popular open source electronic health records and medical practice management solution.
Language:PHP 2601 - hospitalrun
HospitalRun / hospitalrun
Monorepo that holds all of HospitalRun's v2 projects.
Language:JavaScript 884 getodk / collect
ODK Collect is an Android app for filling out forms. It's been used to collect billions of data points in challenging environments around the world. Contribute and make the world a better place! ✨📋✨
Language:Java 698sanger-pathogens / Roary
Rapid large-scale prokaryote pan genome analysis
Language:Perl 291Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Language:Java 225Finds SNP sites from a multi-FASTA alignment file
Language:C 225A tool to circularize genome assemblies
Language:Python 217CSSEGISandData / COVID-19_Unified-Dataset
Unified COVID-19 Dataset
Language:R 179Antimicrobial Resistance Identification By Assembly
Language:Python 152nickjcroucher / gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Language:Python 150- build
ODK Build is a drag-and-drop form designer for ODK XForms. Thousands of users around the world depend on it for their data collection campaigns. Contribute and make the world a better place! ✨📝✨
Language:JavaScript 110 Get assembly statistics from FASTA and FASTQ files
Language:C++ 105chanzuckerberg / czid-web
Infectious Disease Sequencing Platform
Language:TypeScript 77Python3 scripts to manipulate FASTA and FASTQ files
Language:Python 68- Language:Jupyter Notebook 63
OpenLMIS / openlmis-ref-distro
OpenLMIS v3+ Reference Distribution. Last mile health commodity information system.
Language:Python 62ODK Briefcase is a Java application for fetching and pushing forms and their contents. It helps make billions of data points from ODK portable. Contribute and make the world a better place! ✨💼✨
Language:Java 60Improve the quality of a denovo assembly by scaffolding and gap filling
Language:Perl 53de novo virus assembler of Illumina paired reads
Language:Python 52The core library that many of the ODK tools are built around. It's written in Java, implements the ODK XForms spec, and runs on mobile devices and cloud servers. ✨🏗✨
Language:Java 51andrewjpage / tiptoft
Predict plasmids from uncorrected long read data
Language:Python 37dimagi / commcare-android
Offline First Android software client for CommCare, the world's largest platform for designing, managing, and deploying robust mobile applications to frontline workers worldwide
Language:Java 35The XForms-derived specification used in the ODK ecosystem. If you are interested in building a tool that is compliant with the forms rendered by ODK tools, this is the place to start. ✨⚒✨
Language:CSS 30Vue.js based frontend for ODK Central
Language:JavaScript 29Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Language:Python 29Assembling the cause of phenotypes and genotypes from NGS data
Language:Python 29Multilocus sequence typing by blast using the schemes from PubMLST
Language:Perl 25Skunkworks-crow is an Android app for sharing filled forms stored in ODK Collect from one device to another
Language:Java 23SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Language:Python 23A set of tools to analyse the output from TraDIS analyses
Language:Perl 20CDCgov / ITF_Power_BI
Contains functions for pulling publicly-available global COVID-19 case and testing data for analysis and populating a Power BI dashboard. ARCHIVED: See ITF-Dashboard Repository for further development
Language:R 19meleksomai / Awesome-Digital-Global-Health
A curated list of awesome Digital Global Health resources and software.
terraframe / geoprism-registry
GeoPrism Registry is a system for curating interlinked data through time. It's the first framework implementing the Common Geo-Registry specification.
Language:Java 17k-mer based Pipeline to identify the Serotype from Illumina NGS reads
Language:Python 15Pathogen-Genomics-Cymru / lodestone
Mycobacterial pipeline
Language:Python 12ODK Validate is a Java application for confirming that a form is valid and compliant with the ODK XForms specification. Contribute and make the world a better place! ✨🔍✨
Language:Java 9