ct-scans
There are 4 repositories under ct-scans topic.
eidelen / DicomToMesh
A command line tool to transform a DICOM volume into a 3d surface mesh (obj, stl or ply). Several mesh processing routines can be enabled, such as mesh reduction, smoothing or cleaning. Works on Linux, OSX and Windows.
Language:C++ 414kaushikjadhav01 / COVID-19-Detection-Flask-App-based-on-Chest-X-rays-and-CT-Scans
COVID-19 Detection Chest X-rays and CT scans: COVID-19 Detection based on Chest X-rays and CT Scans using four Transfer Learning algorithms: VGG16, ResNet50, InceptionV3, Xception. The models were trained for 500 epochs on around 1000 Chest X-rays and around 750 CT Scan images on Google Colab GPU. A Flask App was later developed wherein user can upload Chest X-rays or CT Scans and get the output of possibility of COVID infection.
Language:Jupyter Notebook 123- Language:Python 105
AiAiHealthcare / ProjectAiAi
AiAi.care project is teaching computers to "see" chest X-rays and interpret them how a human Radiologist would. We are using 700,000 Chest X-Rays + Deep Learning to build an FDA 💊 approved, open-source screening tool for Tuberculosis and Lung Cancer. After an MRMC clinical trial, AiAi CAD will be distributed for free to emerging nations, charitable hospitals, and organizations like WHO 🌏 We will also release our pretrained models and weights as Medical Imagenet.
Language:Dockerfile 101jeremykohn / rid-covid
Image-based COVID-19 diagnosis. Links to software, data, and other resources.
mr7495 / COVID-CT-Code
Fully automated code for Covid-19 detection from CT scans from paper: https://doi.org/10.1016/j.bspc.2021.102588
Language:Jupyter Notebook 61rachellea / ct-volume-preprocessing
End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."
Language:Python 44- MP3
nifm-gin / MP3
:twisted_rightwards_arrows: Medical software for Processing multi-Parametric images Pipelines
Language:MATLAB 40 - CTLabeling
IAmS4n / CTLabeling
A simple privacy-focused web panel in flask for labeling CT Scan's slices
Language:Python 29 AlexTS1980 / COVID-CT-Mask-Net
Segmentation and Classification models for COVID CT scans (COVID, pneumonia, normal) based on Mask R-CNN.
Language:Python 28- CTSegNet
aniketkt / CTSegNet
CTSegNet is an end-to-end 3D segmentation package for large X-ray tomographic datasets using 2D fully convolutional neural networks (fCNN).
Language:Jupyter Notebook 26 - COVID-CT-MD
ShahinSHH / COVID-CT-MD
A COVID-19 CT Scan Dataset Applicable in Machine Learning and Deep Learning
Language:Python 25 NLeSC / yeap16-ai-3d-printing
CNN's for bone segmentation of CT-scans.
Language:Python 24omagdy / 3DRDN-CycleGAN
Deep CNN for performing 3D super resolution on CT/MRI scans
Language:Python 20Machine learning models for multi-organ, multi-disease prediction in chest CT volumes. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."
Language:Python 20- CTScanVisualiser
RoyRoden / CTScanVisualiser
A Unity scene setup that generates a 3D Texture from a series of CT scans and turn it into a volume of particles
vibhuagrawal14 / ctviewer
View volumetric (3D) medical images in Jupyter notebooks
Language:Python 14motokimura / kits19_3d_segmentation
PyTorch implementation of 3D U-Net for kidney and tumor segmentation from KiTS19 CT scans.
Language:Jupyter Notebook 13- Fibro-CoSANet
zabir-nabil / Fibro-CoSANet
Idiopathic pulmonary fibrosis (IPF) is a restrictive interstitial lung disease that causes lung function decline by lung tissue scarring. Although lung function decline is assessed by the forced vital capacity (FVC), determining the accurate progression of IPF remains a challenge. To address this challenge, we proposed Fibro-CoSANet, a novel end-to-end multi-modal learning-based approach, to predict the FVC decline. Fibro-CoSANet utilized CT images and demographic information in convolutional neural network frameworks with a stacked attention layer. Extensive experiments on the OSIC Pulmonary Fibrosis Progression Dataset demonstrated the superiority of our proposed Fibro-CoSANet by achieving the new state-of-the-art modified Laplace Log-Likelihood score of -6.68. This network may benefit research areas concerned with designing networks to improve the prognostic accuracy of IPF.
Language:Python 13 adhiraiyan / radnet
U-Net for biomedical image segmentation
Language:Python 12- Unity-Dicom-3DRender
sergiosolorzano / Unity-Dicom-3DRender
Unity3d Prototype to manipulate Hounsfield units and create a 3D render of dicom images
Language:C# 9 harshwalia36 / Segmentation_and_classification_of_Covid-19-lungs-CT-Scan
Deep Learning Project which help us to identify a Person is Covid or non-Covid and Segment the Infection in the Lungs.
Language:Jupyter Notebook 7NPPC-UK / microCT_grain_analyser
Software for processing output of Scanco uCT machines/ any ISQ or TIF producing machine, and producing data. See instructions.pdf for full explaination.
Language:MATLAB 7AI-Unipi / Image3DGenerator
A python class compatible with TensorFlow to perform data augmentation on 3D objects during CNN training.
Language:Python 6- Tumor-Motion-Analysis
FotiouK / Tumor-Motion-Analysis
In-depth motion analysis of mobile lung cancer tumors. Designed for 4D-CT scans of the thorax and provide valuable information for proton therapy treatment planning
Language:Python 6 BCV-Uniandes / LUCAS
LUng CAncer Screeningwith Multimodal Biomarkers
Language:Python 5healthcAIr / LuVoX
Workflow-centred open-source fully automated lung volumetry in chest CT.
Language:Python 5barisern / covid19-detection-ai
Covid 19 Detection from CT scans
Language:Jupyter Notebook 4lnugraha / medical-image-reconstruction
Reconstruction of medical image data using DICOM format input data
Language:Python 4Peco602 / brain-stroke-detection-3d-cnn
Train a 3D Convolutional Neural Network to detect presence of brain stroke from CT scans.
Language:Jupyter Notebook 4- Language:Processing 4
amin-nejad / ct-haemorrhage-classification
CT haemorrhage classification problem from Kaggle
Language:Jupyter Notebook 3eyast / LUNA16
Notebooks that accompany medium articles - Build your own data science portfolio - the LUNA16 challenge.
Language:Jupyter Notebook 3MatDagommer / mri-to-ct
Image-to-image deep learning framework for MRI to porosity map translation
Language:Python 3naayem / Medical-CT-Segmentation-DeepLearning
A repository containing deep learning models and evaluation methods for enhancing medical image segmentation in Computed Tomography (CT) scans, with a focus on U-Net variants, nnUNet, and Swin-UNet architectures.
Language:Python 3
