open-science

There are 26 repositories under open-science topic.

hugo-blox-builder
HugoBlox / hugo-blox-builder
🚨 GROW YOUR AUDIENCE WITH HUGOBLOX! 🚀 HugoBlox is an easy, fast no-code website builder for researchers, entrepreneurs, data scientists, and developers. Build stunning sites in minutes. 适合研究人员、企业家、数据科学家和开发者的简单快速无代码网站构建器。用拖放功能、可定制模板和内置SEO工具快速创建精美网站！
hugo academic theme static-site-generator cms blog-engine github-pages netlify hugo-theme page-builder website-builder rmarkdown rstudio r jupyter documentation-tool open-science data-science portfolio blog
Language:HTML 8047
pyvista
pyvista / pyvista
3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
3d fem finite-element-analysis finite-elements hacktoberfest mesh mesh-processing meshviewer open-science plotting python scientific-research scientific-visualization visualization vtk
Language:Python 2553
mdeff / fma
FMA: A Dataset For Music Analysis
dataset music-analysis music-information-retrieval deep-learning open-data open-science reproducible-research
Language:Jupyter Notebook 2189
softwareunderground / awesome-open-geoscience
Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome
awesome-list geoscience open-source open-data awesome geophysics reservoir-modeling seismic geospatial subsurface geology open-science python cheatsheet geosciences geostatistics simulation geochemistry groundwater modflow
1443
InsightSoftwareConsortium / ITK
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
itk insight-toolkit image-analysis medical-imaging scientific-computing open-science open-source reproducible-research numfocus cpp python hacktoberfest
Language:C++ 1395
tdurieux / anonymous_github
Anonymous Github is a proxy server to support anonymous browsing of Github repositories for open-science code and data.
anonymous open-science double-blind double-anonymous peer-review
Language:TypeScript 1370
zenodo / zenodo
Research. Shared.
zenodo invenio python research-data-repository research-data-management flask digital-library open-science open-access scientific-publications library-management elasticsearch postgresql inveniosoftware
Language:Python 906
grass
OSGeo / grass
GRASS GIS - free and open-source geospatial processing engine
grass-gis geospatial geospatial-analysis raster vector timeseries-analysis earth-observation gis hacktoberfest open-science remote-sensing science spatial data-science machine-learning image-processing jupyter parallel-computing arrays python
Language:C 816
nasa / Transform-to-Open-Science
Transformation to Open Science
cross-agency open-code open-data open-science open-source
711
cernopendata / opendata.cern.ch
Source code for the CERN Open Data portal
big-data digital-library digital-repository flask invenio inveniosoftware json-schema open-data open-research-data open-science python research-data research-data-management research-data-repository
Language:Python 657
openml / OpenML
Open Machine Learning
machine-learning open-science science citizen-scientists collaboration opendata datasets hacktoberfest
Language:PHP 656
InsightSoftwareConsortium / itkwidgets
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
itk insight-toolkit jupyter jupyter-widget image-analysis scientific-computing scientific-visualization open-source open-science reproducible-research python medical-visualization jupyterlab-extension imaging kitware meshes point-cloud
Language:Python 575
asoplata / open-computational-neuroscience-resources
A publicly-editable collection of open computational neuroscience resources
neuroscience neuroscience-data neural-simulators neuroimaging-data electrophysiological-data neuroscience-methods computational-neuroscience computational-biology awesome awesome-list open-science neural-simulations brain neuron-models simulation-neuroscience
542
simpeg
simpeg / simpeg
Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.
python finite-volume geophysics inversion linear-algebra partial-differential-equations optimization geoscience modelling simulation electromagnetics magnetotellurics direct-current-resistivity induced-polarization richards-equation open-science modeling scientific-computing inverse-problems multiphysics
Language:Python 496
anahitasocial / anahita
Anahita is a platform and framework for developing open science and knowledge sharing applications on a social networking foundation.
graph-architecture framework platform knowledge-sharing open-science open-data location-graph social-apps social-networking social-network-graph anahita anahita-apps notifications actors hashtags locations mentions social-graph
Language:PHP 434
avogadrolibs
OpenChemistry / avogadrolibs
Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
avogadro chemistry compchem computational-chemistry cross-platform desktop hacktoberfest open-science open-source openchemistry opengl qt5 scientific-computing visualization
Language:C++ 428
Chicago / food-inspections-evaluation
This repository contains the code to generate predictions of critical violations at food establishments in Chicago. It also contains the results of an evaluation of the effectiveness of those predictions.
chicago data-science open-data open-science food-poisoning cdph public-health
Language:HTML 406
nsidc / earthaccess
Python Library for NASA Earthdata APIs
access climate-data cloud-computing cmr data gis nasa nasa-api nasa-data open-science openscience pangeo remote-sensing
Language:Python 384
eclipse / repairnator
Software development bots for Github. Join the bot revolution! :star2::robot::star2::revolving_hearts:
java program-repair bot ci research open-science kth inria repair hacktoberfest
Language:Java 382
openlists / ElectrophysiologyData
A list of openly available datasets in (mostly human) electrophysiology.
data ecog eeg electrophysiological-data electrophysiology lfp meg open-data open-science research
354
orfeotoolbox / OTB
Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb
otb orfeotoolbox cpp14 osgeo open-source image-processing remote-sensing open-science reproducible-research
Language:GLSL 346
OpenChemistry / tomviz
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
3d-graphics materials-science open-science open-source opengl python scientific-visualization tomography visualization
Language:C++ 317
gwastro / pycbc
Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.
astronomy physics gravity ligo gravitational-waves pycbc analysis python black-hole neutron-star gwastro virgo signal-processing open-science cosmic-explorer einstein-telescope lisa
Language:Python 312
google-research / arco-era5
Recipes for reproducing Analysis-Ready & Cloud Optimized (ARCO) ERA5 datasets.
cloud-optimized ecmwf era5 zarr open-science
Language:Python 284
serratus
ababaian / serratus
Ultra-deep search for novel viruses
bioinformatics covid19 sars-cov-2 coronavirus aws open-science
Language:Jupyter Notebook 253
jewettaij / moltemplate
A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies
molecule-builder lammps molecular-dynamics force-fields coarse-grained-molecular-dynamics molecule-editor opls amber open-science lammps-data lammps-tool lammps-script-creator
Language:Python 249
OpenGeoVis / PVGeo
🌍 Python package of VTK-based algorithms to analyze geoscientific data and models
data-visualization geophysics geosciences paraview-plugin paraview visual-data-integration open-science python model-building vtk visualization 3d
Language:Python 211
OpenKnowledgeMaps / Headstart
A framework for creating web-based knowledge maps
visualization open-science discovery-interface scholarly-communication
Language:JavaScript 194
InsightSoftwareConsortium / ITK-Wasm
High performance spatial analysis in a web browser and across programming languages and hardware architectures
input-output insight-toolkit emscripten reproducible-science open-science javascript imaging itk webassembly asmjs wasm itk-module vtk wasi
Language:Python 193
OpenChemistry / avogadroapp
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
avogadro chemistry compchem cross-platform desktop hacktoberfest open-science openchemistry qt5 visualization
Language:C++ 181
NeurodataWithoutBorders / pynwb
A Python API for working with Neurodata stored in the NWB Format
neuroscience python hdf hdf5 cross-platform open-data data-format open-source open-science reproducible-research pynwb nwb nwb-n neurodata-without-borders
Language:Python 175
openSNP / snpr
The sources of the openSNP website
open-science rails opensnp bioinformatics
Language:HTML 169
duartegroup / autodE
automated reaction profile generation
computational-chemistry open-science
Language:Python 166
OBOFoundry / OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
ontology-registry obo ontology semantic-web bioinformatics life-sciences metadata open-science open-source annotation biocuration obofoundry
Language:Python 161
joachim-gassen / ExPanDaR
R Package for Interactive Panel Data Exploration
accounting eda exploratory-data-analysis finance open-science package r replication shiny shiny-apps
Language:R 151
oxinabox / DataDeps.jl
reproducible data setup for reproducible science
data data-science open-science
Language:Julia 150

open-science

HugoBlox / hugo-blox-builder

pyvista / pyvista

mdeff / fma

softwareunderground / awesome-open-geoscience

InsightSoftwareConsortium / ITK

tdurieux / anonymous_github

zenodo / zenodo

OSGeo / grass

nasa / Transform-to-Open-Science

cernopendata / opendata.cern.ch

openml / OpenML

InsightSoftwareConsortium / itkwidgets

asoplata / open-computational-neuroscience-resources

simpeg / simpeg

anahitasocial / anahita

OpenChemistry / avogadrolibs

Chicago / food-inspections-evaluation

nsidc / earthaccess

eclipse / repairnator

openlists / ElectrophysiologyData

orfeotoolbox / OTB

OpenChemistry / tomviz

gwastro / pycbc

google-research / arco-era5

ababaian / serratus

jewettaij / moltemplate

OpenGeoVis / PVGeo

OpenKnowledgeMaps / Headstart

InsightSoftwareConsortium / ITK-Wasm

OpenChemistry / avogadroapp

NeurodataWithoutBorders / pynwb

openSNP / snpr

duartegroup / autodE

OBOFoundry / OBOFoundry.github.io

joachim-gassen / ExPanDaR

oxinabox / DataDeps.jl