manuscript

There are 1 repository under manuscript topic.

• greenelab / deep-review

  A collaboratively written review paper on deep learning, genomics, and precision medicine

  deep-learninggenomicsmanubotmanuscriptneural-networksreview
  Language:HTML 1233
• report

  easystats / report

  :scroll: :tada: Automated reporting of objects in R

  anovasapaautomated-report-generationautomaticbayesiandescribeeasystatshacktoberfestmanuscriptmodelsrr-packagereportreportingreportsrstatsscientificstatsmodels
  Language:R 663

• crsh / papaja

  papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

  rmarkdownapajournalapa-guidelinespsychologyrmanuscriptreproducible-paperreproducible-researchr-package
  Language:HTML 628

• massimoaria / bibliometrix

  An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.

  bibliometricsisi-webscopuscitationscitation-networkcouplingco-authorsco-occurenceco-word-analysisbibliometric-analysiscorrespondence-analysiscitationscientificscholarsscientometricssciencemanuscriptjournalquantitative-analysisscience-mapping
  Language:R 464

• manubot / rootstock

  Clone me to create your Manubot manuscript

  markdownmanuscriptpublishingmanubotdoicitationcontinuous-publication
  Language:HTML 442

• Benjamin-Lee / deep-rules

  Ten Quick Tips for Deep Learning in Biology

  deep-learningmanuscriptmanubotbiologybioinformaticscomputational-biologymachine-learningdata-sciencegenomics
  Language:HTML 227

• academic / vipa

  :books: Virtual Intelligent Publishing Assistant (Vipa): A journal management and publishing software

  journal-managementacademic-publishingmanuscriptpublishingvipaojsassistant-personnel
  Language:PHP 127

• greenelab / covid19-review

  A collaborative review of the emerging COVID-19 literature. Join the chat here:

  covid-19sars-cov-2manuscriptmanubotreviewvirusimmunologyhacktoberfest
  Language:TeX 116

• philippbayer / submission_checklist

  A checklist to help you avoid all those minor errors when submitting a scientific manuscript

  coverlettermanuscript
  83

• floriankrueger / Manuscript

  AutoLayoutKit in pure Swift.

  swiftcarthageautolayouttvosioscocoapodsmanuscriptuikit
  Language:Swift 76

• VeinsOfTheEarth / RivGraph

  Extracting and quantifying graphical representations of river and delta channel networks from binary masks

  manuscriptpython
  Language:Python 70

• greenelab / adage

  Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016

  manuscriptmethodologyresearchpaperdatasupplementdatasetmachine-learningdenoising-autoencodersneural-networksautoencodersgene-expressionpseudomonas-aeruginosa
  Language:Python 62

• manubot / try-manubot

  A repository to practice contributing to a Manubot manuscript

  try-meplaygroundmanubotmanuscriptpracticedemo
  Language:HTML 44

• cboettig / nonparametric-bayes

  :notebook: Non-parametric Bayesian Inference for Conservation Decisions

  research-compendiumreproducible-researchmanuscriptr
  Language:TeX 42

• VeinsOfTheEarth / rabpro

  Delineating watershed basins and computing attribute statistics using Google Earth Engine

  pythonmanuscript
  Language:Python 35

• greenelab / scihub-manuscript

  Manuscript for the Sci-Hub Coverage Study

  sci-hubmanuscriptmanubotmarkdown
  Language:HTML 32

• leeper / make-example

  An example of using make for a data analysis project

  makereproducible-researchdata-analysismanuscript
  Language:R 32

• XSLiuLab / tumor-immunogenicity-score

  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

  analysis-reportreproducible-analysismanuscripttumor-immunogenicityimmunotherapybiomarker-discovery
  Language:R 30

• balta2ar / manuscript-dl

  Collection of scripts to download digitized manuscripts from various online libraries

  downloaddownloadermanuscript-dllibrarydownload-digitized-manuscriptsmanuscriptpdfpythonelibrarycalligraphy
  Language:Python 21

• piero-g / markdown-workflow

  A pandoc-based layout workflow for scholarly journals. It relies on markdown, YAML and pandoc to obtain multiple publication formats

  manuscriptworkflowjournalspandocyamlmarkdownpublishing
  Language:Shell 21

• MarioniLab / EmptyDrops2017

  Code for the empty droplet and cell detection project from the HCA Hackathon.

  human-cell-atlasmanuscriptsimulationssingle-cell-rna-seq
  Language:TeX 18

• MarioniLab / Deconvolution2016

  Code and manuscript files for Aaron and Karsten's deconvolution paper.

  manuscriptnormalizationsingle-cellsimulations
  Language:TeX 17

• trydave / Mentor4Nepal

  #Mentor4Nepal Initiative is for recent graduates and early career professionals focusing on the enhancement of one’s skill set, support for a research project, and a collaborative publication.

  mentoringgraduatesearly-career-researcherstudentsstudent-projectnepalpublicationresearchmanuscript
  Language:CSS 16

• pblischak / polyploid-genotyping

  SNP genotyping in polyploids

  snp-genotypingbioinformaticspopulation-geneticsmanuscriptcpp11genotype-likelihoodsrcpp
  Language:C++ 15

• cboettig / pdg_control

  :notebook: Pretty Darn Good Control: applications in optimal control

  manuscriptreproducible-researchresearch-compendiumr
  Language:R 11

• aeturrell / cookie-cutter-latex-book-manuscript

  A simple book manuscript in latex designed for export to Word via pandoc

  templatelatex-templatepandocmicrosoft-wordmanuscriptbookwritingresearch-paper
  Language:TeX 10

• mikemc / differential-abundance-theory

  A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.

  biasdifferential-abundance-analysismanuscriptmeasurementsabsolute-abundances
  Language:HTML 10

• swung-research / 3d-csem-open-source-landscape

  Werthmüller, D., R. Rochlitz, O. Castillo-Reyes, and L. Heagy, 2021, Towards an open-source landscape for 3-D CSEM modelling: Geophysical Journal International, 227(1), 644--659

  csem3d-modellingelectromagneticsmanuscript
  Language:Jupyter Notebook 10

• cengels / skywriter

  A distraction-free writer designed for novelists that exports to Markdown for easy integration with version control.

  qtqtquickrich-text-editorrich-textwritingnovelcpluspluswritersmanuscriptmarkdownmarkdown-editor
  Language:C++ 9

• GKalliatakis / LaTeX-Journal-Assistant

  :memo: Your LaTeX-based assistant to count on when submitting your scientific documents

  latexlatex-templatejournal-articlemanuscriptresearch-paper
  Language:TeX 9

• GLEON / kgml_waterbody-area

  Using knowledge-guided machine learning to assess patterns of areal change in waterbodies across the contiguous US

  rstatsmanuscriptpython
  Language:Jupyter Notebook 9

• sckott / textmine

  rOpenSci textmining manuscript

  manuscriptpapertextext-mining
  Language:TeX 9

• bhaskatripathi / Journalfinder

  The Scientific Journal Finder suggests the best matching journals for a given research paper.

  citationjournalmanuscriptscientific-journals
  Language:Python 8

• MarioniLab / PlateEffects2016

  Code and manuscript files for Aaron's plate effect paper.

  single-cellmanuscriptdifferential-expressionsimulations
  Language:PostScript 8

• russelljjarvis / ScienceAccessibility

  Analysis of accessibility of science writing.

  scraping-websitespython3daskaccesibilitysciencelanguagemanuscriptnltkstreamlit-dashboard
  Language:Python 7

• habedi / SurvivalAnalysisQACommunities

  The repository hosts the code, data, and other artefacts for the paper "Survival analysis for user disengagement prediction: question-and-answering communities' case", available here: https://rdcu.be/cSl24

  experimentsmanuscriptnotebooks-jupyterquestion-answeringsocial-network-analysissurvival-analysisresearch-paperdataset
  Language:Jupyter Notebook 6