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A collaboratively written review paper on deep learning, genomics, and precision medicine
An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.
Ten Quick Tips for Deep Learning in Biology
A collaborative review of the emerging COVID-19 literature. Join the chat here:
A checklist to help you avoid all those minor errors when submitting a scientific manuscript
Extracting and quantifying graphical representations of river and delta channel networks from binary masks
AutoLayoutKit in pure Swift.
A repository to practice contributing to a Manubot manuscript
:notebook: Non-parametric Bayesian Inference for Conservation Decisions
Delineating watershed basins and computing attribute statistics using Google Earth Engine
Manuscript for the Sci-Hub Coverage Study
An example of using make for a data analysis project
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
Collection of scripts to download digitized manuscripts from various online libraries
A pandoc-based layout workflow for scholarly journals. It relies on markdown, YAML and pandoc to obtain multiple publication formats
Code for the empty droplet and cell detection project from the HCA Hackathon.
Code and manuscript files for Aaron and Karsten's deconvolution paper.
#Mentor4Nepal Initiative is for recent graduates and early career professionals focusing on the enhancement of one’s skill set, support for a research project, and a collaborative publication.
SNP genotyping in polyploids
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
Werthmüller, D., R. Rochlitz, O. Castillo-Reyes, and L. Heagy, 2021, Towards an open-source landscape for 3-D CSEM modelling: Geophysical Journal International, 227(1), 644--659
:notebook: Pretty Darn Good Control: applications in optimal control
A simple book manuscript in latex designed for export to Word via pandoc
Using knowledge-guided machine learning to assess patterns of areal change in waterbodies across the contiguous US
:memo: Your LaTeX-based assistant to count on when submitting your scientific documents
Code and manuscript files for Aaron's plate effect paper.
The Scientific Journal Finder suggests the best matching journals for a given research paper.
Analysis of accessibility of science writing.
The repository hosts the code, data, and other artefacts for the paper "Survival analysis for user disengagement prediction: question-and-answering communities' case", available here: https://rdcu.be/cSl24