maximum-parsimony

There are 0 repository under maximum-parsimony topic.

• usher

  yatisht / usher

  Ultrafast Sample Placement on Existing Trees

  sars-cov-2phylogeneticsmaximum-parsimonyushergenome-browserphylogenetic-placement
  Language:C++ 120

• yatisht / strain_phylogenetics

  Tools for analyzing and comparing SARS-CoV-2 phylogenies

  sars-cov-2phylogeneticsmaximum-parsimonytanglegramsextremal-sitesgenome-browserusher
  Language:C++ 9

• UdeM-LBIT / superrec2

  Run and compare algorithms for phylogenetic reconciliation and super-reconciliation

  phylogeneticsreconciliationmaximum-parsimonysynteny
  Language:Python 4

• kwoehrer / UPGMA-Phylogeny-Parsimony

  UPGMA Trait-Based Phlyogenetic Tree Generator With Optional Parsimony Capabilities

  phylogenyupgma-clusteringtrait-basedparsimonyphylogenetic-treesmaximum-parsimony
  Language:Java 2

• d-dawg78 / COMP561-Final-Project

  McGill University - Computational Biology Methods and Research Project

  phylogenetic-treesmaximum-parsimonygene-evolutionsequence-alignmentneedleman-wunsch
  Language:Python 1

• jasnap / philogenetic_trees

  Parallel and sequential algorithms for finding philogenetic trees using Maximum Parsimony. The scoring algorithm used is Fitch scoring algorithm. Exhaustive search and Branch and Bound search algorithms are implemented in sequential variant. SPMD method is used in parallel implementation.

  scoring-algorithmexhaustive-searchparallelfitch-scoring-algorithmbound-searchphilogenetic-treesmaximum-parsimonymatlabbranch-and-bound
  Language:MATLAB 1

• kris96tian / Phylogenetic_Tree_Generator

  Web App for constructing phylogenetic trees using various clustering methods and algorithms.

  clustering-treesdistance-matrixevolutionary-algorithmsmaximum-parsimonyneighbor-joiningphylogenetic-treesphylogeneticsupgma-clustering
  Language:Python 0

• Bader-Research / ExactMP

  ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony

  maximum-parsimonyphylogenetic-treesbiologyparallel-computingparallel-algorithm
  Language:C