There are 6 repositories under mathematical-biology topic.
Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.
ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.
C++/CUDA Implementation of the most popular reaction-diffusion dynamics
Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.
Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.
Physically Based Modelling of Cirdadian Glucose Dynamics
Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.
Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl
Exploring biological networks with javascript
Tutorials on math epidemiology and epidemiology informed deep learning methods
epidWaves is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data.
Computational models for epithelial transport along the nephron.
3MC - African Mathematical School on Mathematical Modeling in Biology
lattice based model of stripe formation in zebra fish
Code base for honours thesis
Mathematical Models of Quorum Sensing
R code for Allman And Rhodes' book "Mathematical Models in Biology: An Introduction"
Basic Turing Pattern Model using the Schnakenberg System
Analysis script for "Neutral competition boosts chaos in food webs"
The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
The codes of Drylab Team, iGEM ITB 2017 to support the wetlab.
Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.
Resources about projects on mathematical biology.
Mathematical model for sumoylation
This repository is for Jarvis Bulldog Team of FacutyHack@Gateways23 with SGX3.
Predator Only Lotka–Volterra Model
Moises curriculum, teaching experience and research interests.
Personal page of Julien Arino
Hybrid Cellular Automata that represents field cancerization.