mathematical-biology
There are 6 repositories under mathematical-biology topic.
- Language:C++ 115
JuliaEpi / MathEpiDeepLearning
Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.
epidemiological-modelsmathematical-epidemiologyuniversal-differential-equationsneural-differential-equationsphysics-informed-neural-networksdata-driven-modelbayesian-inferencebayesian-deep-learningprobabilistic-machine-learningmathematical-biologymachine-learningdata-sciencedeep-learningstatisticsdata-analysistime-seriestime-series-analysisjuliascientific-machine-learningcovid19-dataLanguage:JavaScript 29iliailmer / ParameterEstimation.jl
ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
Language:Julia 26pmontalb / TuringPatterns
C++/CUDA Implementation of the most popular reaction-diffusion dynamics
Language:Cuda 16- EPIDEMIC
americocunhajr / EPIDEMIC
EPIDEMIC is an easy-to-run educational toolkit for epidemiological analysis.
Language:MATLAB 14 - COVID19RJ
Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.
Language:Jupyter Notebook 8 Mathepia / awesome-sciml
Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.
bayesian-deep-learningbayesian-inferencedata-sciencedeep-learningjuliamachine-learningmathematical-biologymathematical-epidemiologyneural-odephysics-informed-neural-networkspinnsprobabilistic-machine-learningprobabilistic-programmingscientific-computingscientific-machine-learningtime-seriesuniversal-differential-equationsLanguage:JavaScript 7ethrya / circadianGlucose
Physically Based Modelling of Cirdadian Glucose Dynamics
Language:MATLAB 4Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl
Language:Julia 4- bioscillators.com
norregaarden / bioscillators.com
Exploring biological networks with javascript
Language:HTML 4 - epidWaves
epidWaves is a package to fit multi-wave statistical models to the complex epidemic data.
Language:MATLAB 3 Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.
Language:Julia 3Layton-Lab / nephron
Computational models for epithelial transport along the nephron.
Language:Python 3- Language:Python 3
Song921012 / MathEpiDeepLearningTutorial
Tutorials on math epidemiology and epidemiology informed deep learning methods
data-sciencemachine-learningstatisticsdeep-learningtime-seriesjuliadata-analysisbayesian-inferencemathematical-epidemiologymathematical-biologybayesian-deep-learningdata-driven-modelscientific-machine-learningneural-differential-equationsprobabilistic-machine-learninguniversal-differential-equationsepidemiological-modelsphysics-informed-neural-networksLanguage:Julia 3- Language:C 2
ecomino / Actomyosin-Structures-in-Stress-Fibres
Code base for honours thesis
Language:Julia 1jtbates / MMiB_R
R code for Allman And Rhodes' book "Mathematical Models in Biology: An Introduction"
Language:R 1julien-arino / 3MC-mathematical-modelling-in-biology
3MC - African Mathematical School on Mathematical Modeling in Biology
Language:R 1KCGallagher / Schnakenberg_Sim
Basic Turing Pattern Model using the Schnakenberg System
Language:Python 1PabRod / Chaos-and-neutrality
Analysis script for "Neutral competition boosts chaos in food webs"
Language:MATLAB 1abdouf / parasite-induced-shifts
The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.
Language:MATLAB 0catohaste / neighbourhood-streak
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
Language:Python 0GaTechBrownLab / qsmodels
Mathematical Models of Quorum Sensing
Language:Mathematica 0hakimbazol / iGEMITB2017
The codes of Drylab Team, iGEM ITB 2017 to support the wetlab.
Language:MATLAB 0Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.
Language:Python 0Resources about projects on mathematical biology.
Language:JavaScript 0- Language:MATLAB 0
shraddhapuntambekar / Mathematical-model-for-sumoylation
Mathematical model for sumoylation
Language:Mathematica 0- Language:HTML
CZenkert / Turing-Pattern-Formation
lattice based model of stripe formation in zebra fish
Language:Jupyter NotebookDelSquared / Predator-Only-Lotka-Volterra-Model
Predator Only Lotka–Volterra Model
Language:Pythongualapuromoises / MoisesGualapuro
Moises curriculum, teaching experience and research interests.
Language:JavaScriptPersonal page of Julien Arino
Language:HTMLKarlJack47 / HybridCAFieldCancerization
Hybrid Cellular Automata that represents field cancerization.
Language:Cwsamyono / JarvisBulldogTeamFacHackGW23
This repository is for Jarvis Bulldog Team of FacutyHack@Gateways23 with SGX3.
Language:Jupyter Notebook
