simulation-based-inference

There are 4 repositories under simulation-based-inference topic.

sbi-dev / sbi
Simulation-based inference toolkit
simulation-based-inference likelihood-free-inference bayesian-inference parameter-estimation pytorch machine-learning
Language:Python 521
undark-lab / swyft
A system for scientific simulation-based inference at scale.
likelihood-free-inference simulation-based-inference marginal-neural-ratio-estimation neural-ratio-estimation machine-learning parameter-estimation python pytorch truncated-neural-ratio-estimation
Language:Jupyter Notebook 151
lampe
probabilists / lampe
Likelihood-free AMortized Posterior Estimation with PyTorch
bayesian density-estimation density-ratio-estimation inference likelihood-free-inference normalizing-flows probability simulation-based-inference python pytorch
Language:Python 104
mackelab / delfi
Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi instead
density-estimation bayesian-inference abc neural-networks machine-learning simulation-based-inference likelihood-free
Language:Python 71
smsharma / awesome-neural-sbi
Community-sourced list of papers and resources on neural simulation-based inference.
sbi simulation-based-inference neural-simulation-based-inference lfi likelihood-free-inference
60
montefiore-ai / hypothesis
A Python toolkit for (simulation-based) inference and the mechanization of science.
inference deep-learning likelihood-free simulation-based-inference
Language:Python 49
probcomp / Genify.jl
Automatically convert Julia methods to Gen functions.
probabilistic-programming program-transformation simulation-based-inference
Language:Julia 47
hyunjimoon / SBC
diagnostics simulation-based-inference
Language:R 46
wangbingjie / sbi_pp
Simulation-based (likelihood-free) inference customized for astronomical applications
sed-fitting simulation-based-inference
Language:Jupyter Notebook 23
mlcolab / sbi-workshop
SBI Workshop jointly by Helmholtz AI + ML ⇌ Science Colaboratory
simulation-based-inference
Language:Jupyter Notebook 20
JoeriHermans / constraining-dark-matter-with-stellar-streams-and-ml
Probing the nature of dark matter by inferring the dark matter particle mass with machine learning and stellar streams.
astrophysics dark-matter machine-learning likelihood-free-inference deep-learning simulation-based-inference
Language:Jupyter Notebook 17
ma921 / BASQ
(NeurIPS 2022) Fast Bayesian Inference with Batch Bayesian Quadrature via Kernel Recombination
bayesian-inference bayesian-quadrature quadrature simulation-based-inference machine-learning
Language:Python 16
ma921 / SOBER
Fast Bayesian optimization, quadrature, inference over arbitrary domain with GPU parallel acceleration
bayesian-inference bayesian-optimization bayesian-quadrature blackbox-optimization drug-discovery quadrature simulation-based-inference global-optimization machine-learning optimization parameter-estimation
Language:Jupyter Notebook 16
montefiore-ai / balanced-nre
Code for the paper "Towards Reliable Simulation-Based Inference with Balanced Neural Ratio Estimation".
bayesian-inference classification deep-learning likelihood-free-inference machine-learning paper simulation-based-inference
Language:Jupyter Notebook 12
paltas
swagnercarena / paltas
Conduct simulation-based inference on strong gravitational lensing systems.
simulation-based-inference neural-network astrophysics cosmology hierarchical-model
Language:Python 12
PEREGRINE-GW / peregrine
A simulation-based Inference (SBI) library designed to perform analysis on a wide class of gravitational wave signals
algorithm gravitational-waves inference machine-learning neural-ratio-estimation parameter-estimation python pytorch-lightning simulation-based-inference
Language:Python 11
MaximeVandegar / NEB
Code for reproducing the experiments in the paper Neural Empirical Bayes: Source Distribution Estimation and its Applications to Simulation-Based Inference.
empirical-bayes neural-empirical-bayes inverse-problems source-distribution-estimation simulation-based-inference
Language:Python 10
smsharma / hierarchical-inference
Hierarchical neural implicit inference over event ensembles. Code repository associated with https://arxiv.org/abs/2306.12584.
astrophysics cosmology hierarchical-models particle-physics sbi simulation-based-inference neural-sbi
Language:Jupyter Notebook 10
dirmeier / sbijax
Simulation-based inference in JAX
abc approximate-bayesian-computation python simulation-based-inference normalizing-flows smc-abc
Language:Python 9
msainsburydale / NeuralEstimators.jl
Julia package for neural estimation
deep-learning likelihood-free likelihood-free-inference parameter-estimation simulation-based-inference statistics
Language:Julia 9
smsharma / jax-conditional-flows
Normalizing flow models allowing for a conditioning context, implemented using Jax, Flax, and Distrax.
density-estimation likelihood-free-inference normalizing-flows simulation-based-inference
Language:Jupyter Notebook 9
JBris / model-calibration-evaluation
Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference
bayesian-optimization bayesian-statistics pymc sensitivity-analysis uncertainty-analysis polynomial-chaos polynomial-chaos-expansion differential-evolution-mcmc sobol-indices global-optimization approximate-bayesian-computation kriging surrogate-models optuna shuffled-complex-evolution likelihood-free-inference bolfi simulation-based-inference deep-learning generative-neural-network
Language:Python 7
trivnguyen / JeansGNN
Neural Simulation-based Inference with GNN for Jeans Modeling
geometric-deep-learning graph-neural-networks pytorch pytorch-geometric pytorch-lightning simulation-based-inference
Language:Jupyter Notebook 7
yandexdataschool / inverse-problem-intensive
A short course on simulation-based infernce for physics at YSDA in April 2021
machine-learning inference simulation-based-inference bayesian-inference optimisation surrogate-based-optimization neural-ode
Language:Jupyter Notebook 7
ThomasGesseyJones / FullyBayesianForecastsExample
Example of a fully Bayesian forecast using evidence networks applied to 21-cm cosmology
21cm-signal astronomy astrophysics bayesian-methods cosmology python simulation-based-inference statistics
Language:TeX 6
florent-leclercq / correlations_vs_field
Correlation functions versus field-level inference in cosmology: example with log-normal fields
cosmology cosmological-inference bayesian-data-analysis approximate-bayesian-computation simulation-based-inference likelihood-free-inference data-assimilation markov-chain-monte-carlo
Language:Jupyter Notebook 4
mackelab / sbi-for-connectomics
Research code and results for the paper "Simulation-based inference for computational connectomics" (Boelts et al. 2023 PLoS CB, @janfb)
bayesian-inference connectomics simulation-based-inference
Language:Jupyter Notebook 3
francois-rozet / amnre
Arbitrary Marginal Neural Ratio Estimation for Likelihood-free Inference
simulation-based-inference likelihood-ratio likelihood-free-inference bayesian-inference gravitational-waves
Language:Python 2
rbarrue / sally_cpv_wh
Created for benchmarking different techniques to search for CP violation in the HWW vertex in leptonic WH production.
machine-learning simulation-based-inference
Language:Python 2
SourabhKul / ABC-COVID-19-GPU-TPU
GPU and TPU implementation of parallelized ABC inference for a stochastic epidemiology model for COVID-19
gpu tpu epidemiology covid-19 high-performance-computing approximate-bayesian-computation simulation-based-inference
Language:Jupyter Notebook 2
VogelsLab / fSBI
Companion code to Confavreux*, Ramesh*, Goncalves, Macke* & Vogels*, Meta-learning families of plasticity rules in recurrent spiking networks using simulation-based inference, NeurIPS 2023
meta-learning neuroscience simulation-based-inference synaptic-plasticity spiking-networks
Language:Jupyter Notebook 2
dirmeier / ssnl
Simulation-based inference using SSNL
approximate-bayesian-computation approximate-inference bayesian-inference jax normalizing-flows simulation-based-inference
Language:Python 1
JuliaEpi / MathepiaInference.jl
Bayesian inference tools. Including state-of-the-art inference methods: HMC family, ABC family, Data assimilation, and so on. Part of Mathepia.jl
monto-carlo mcmc mcmc-sampler abc approximate-bayesian-computation likelihood-free-inference simulation-based-inference data-assimilation langevin-mc
Language:Julia 1
matteoruth / npe-astrometry-betapic
astrometry normalizing-flows simulation-based-inference
Language:Python 1
nicolossus / pylfi
pyLFI is a Python toolbox using likelihood-free inference (LFI) methods for estimating the posterior distributions of model parameters.
bayesian-inference likelihood-free-inference simulation-based-inference
Language:Python 1
SvenWientjes / HMM_sbi
Repo for testing out Simulation Based Inference (sbi) with Hidden Markov Models (HMM)
hidden-markov-model hidden-markov-models bayesian-inference bayesian bayesian-statistics bayesian-methods simulation sbi simulation-based-inference tutorial time-series time-series-analysis gaussian normal-distribution gaussian-mixture-models gaussian-distribution state-estimation
Language:Jupyter Notebook 1

simulation-based-inference

sbi-dev / sbi

undark-lab / swyft

probabilists / lampe

mackelab / delfi

smsharma / awesome-neural-sbi

montefiore-ai / hypothesis

probcomp / Genify.jl

hyunjimoon / SBC

wangbingjie / sbi_pp

mlcolab / sbi-workshop

JoeriHermans / constraining-dark-matter-with-stellar-streams-and-ml

ma921 / BASQ

ma921 / SOBER

montefiore-ai / balanced-nre

swagnercarena / paltas

PEREGRINE-GW / peregrine

MaximeVandegar / NEB

smsharma / hierarchical-inference

dirmeier / sbijax

msainsburydale / NeuralEstimators.jl

smsharma / jax-conditional-flows

JBris / model-calibration-evaluation

trivnguyen / JeansGNN

yandexdataschool / inverse-problem-intensive

ThomasGesseyJones / FullyBayesianForecastsExample

florent-leclercq / correlations_vs_field

mackelab / sbi-for-connectomics

francois-rozet / amnre

rbarrue / sally_cpv_wh

SourabhKul / ABC-COVID-19-GPU-TPU

VogelsLab / fSBI

dirmeier / ssnl

JuliaEpi / MathepiaInference.jl

matteoruth / npe-astrometry-betapic

nicolossus / pylfi

SvenWientjes / HMM_sbi