pysb

There are 0 repository under pysb topic.

• sorgerlab / indra

  INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

  systems-biologymodelingbiologycomputational-biologybioinformaticspysbnlpindrasbml
  Language:Python 162
• AMICI

  AMICI-dev / AMICI

  Advanced Multilanguage Interface to CVODES and IDAS

  differentialequationssensitivitiessimulationadjoint-sensitivitiesforward-sensitivitiessbmlsystemsbiologycvodepythonkinetic-modelingmechanistic-modelssensitivity-analysiscvodesidaspysbpetabodeparameter-estimationhacktoberfestmodeling
  Language:Jupyter Notebook 106

• LoLab-MSM / pyvipr

  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

  jupyter-widgetpysbsystems-biologycytoscapejsvisualizationnetwork-visualizationnetworkxsbmlbionetgensbgnjupyterlab-extensiontellurium
  Language:Jupyter Notebook 27

• blakeaw / GAlibrate

  Parameter estimation and model calibration using Genetic Algorithm optimization in Python.

  model-calibrationgenetic-algorithmparameter-estimationoptimizationoptimizerpython3systems-biologypysb
  Language:Python 8

• LoLab-MSM / pydyno

  Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time

  pysbsystems-biologyclusteringdynamic-analysis
  Language:Jupyter Notebook 8

• MurdoChiknas / mTOR_PySB

  Simplified model of mTOR written using PySB. mTOR is modeled such that its activation is due to insulin receptor activation, and inhibited by binding of rapamycin-FKBP complex.

  pysbsystems-biologymtor
  Language:Python 1

• NTBEL / PARM

  PAR2 Activation and calcium signaling Reaction Model in PySB

  systems-biologycell-signallingcalcium-signallingbiological-modelingpysbpar2biological-modelsmolecular-hyperthermiananoparticles
  Language:Python 0