There are 1 repository under sbml-model topic.
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
Spatial bio-chemical reaction model editor and simulator
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.
Interface between the Systems Biology Markup Language and Julia
Easily use the memote command line interface from a docker container.
Python package for managing systems and subsystems of SBML models
A graphical editor for systems biology models.
This repository contains all changes made to the strain specific models of Corynebacterium striatum.
Final Infobiotics Workbench implementation of SBOL and SBML conversion functionality, UI updates, and sequence fetching