3d-slicer-extension

There are 8 repositories under 3d-slicer-extension topic.

• Project-MONAI / MONAILabel

  MONAI Label is an intelligent open source image labeling and learning tool.

  3d3d-slicer-extensionactive-learningdeep-learningmachine-learningmedical-imagingmonaipytorchsegmentation
  Language:Python 540

• Slicer / SlicerJupyter

  Extension for 3D Slicer that allows the application to be used from Jupyter notebook

  3d-slicer-extensionjupyter-notebook
  Language:Python 231

• QIICR / dcmqi

  dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

  quantitative-imagingdicomimaging-informaticsconverterscancer-imaging-researchmedical-image-computingnci-qintcia-dacnci-itcr3d-slicer-extension3d-slicer
  Language:C++ 222

• SlicerRt / SlicerRT

  Open-source toolkit for radiation therapy research, an extension of 3D Slicer. Features include DICOM-RT import/export, dose volume histogram, dose accumulation, external beam planning (TPS), structure comparison and morphology, isodose line/surface generation, etc.

  3d-slicer-extension
  Language:C++ 115

• KitwareMedical / SlicerVirtualReality

  A Slicer extension that enables user to interact with a Slicer scene using virtual reality.

  openvrvtkcmakekitware3d-slicer-extension3d-slicer
  Language:C++ 105

• SlicerHeart / SlicerHeart

  3D Slicer extension for cardiac analysis

  3d-slicer-extension
  Language:Python 97

• SlicerIGT / SlicerIGT

  Modules supporting image-guided interventions in 3D Slicer.

  3d-slicer-extension
  Language:C++ 86

• SlicerMorph / SlicerMorph

  Extension to import microCT data and conduct 3D morphometrics in Slicer

  3d-slicer-extension
  Language:Python 81

• SlicerDMRI / SlicerDMRI

  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

  diffusion-mri3d-slicermedical-image-computingneuroimaging3d-slicer-extensiontractography
  Language:C++ 73

• DCBIA-OrthoLab / SlicerAutomatedDentalTools

  A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS

  3d-slicer-extension3d-images3d-modelsdeep-learninglandmark-localizationmachine-learningorthodonticssegmentationmonaipytorch
  Language:Python 70

• rbumm / SlicerLungCTAnalyzer

  This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.

  3d-slicer-extensionct-volumetrycovid-volumetrycovidcovid-19lung-ctlung-diseaselung-lobeslung-segmentationmedical-imaging
  Language:Python 63

• Slicer / ExtensionsIndex

  Slicer extensions index

  cross-platformmedical-imagingimage-processingnational-institutes-of-healthnihmedical-image-computingsegmentationregistrationneuroimagingvtkpythonqt3d-slicer3d-slicer-extension
  Language:Python 57

• fsemerar / SlicerTomoSAM

  An extension of 3D Slicer using the Segment Anything Model (SAM) to aid the segmentation of 3D data from tomography or other imaging techniques.

  3d-slicer-extensionsegment-anything-model
  Language:Python 53

• lassoan / SlicerElastix

  This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.

  3d-slicer-extension
  Language:Python 43

• NIRALUser / SPHARM-PDM

  Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.

  3d-slicer-extensionspherical-harmonics3d-modelsdecomposition
  Language:C++ 42

• lassoan / SlicerSegmentEditorExtraEffects

  Many additional segmentation tools for 3D Slicer's Segment Editor

  3d-slicer-extension
  Language:Python 40

• DCBIA-OrthoLab / SlicerDentalModelSeg

  This extension aims to provide a GUI for a deep-learning automated teeth segmentation tool that we developed at the University of North Carolina in Chapel Hill in collaboration with the University of Michigan in Ann Arbor.

  3d-slicer-extension
  Language:Python 32

• R-Vessel-X / SlicerRVXLiverSegmentation

  3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X

  3d-slicer-extension
  Language:Python 29

• fepegar / SlicerPyTorch

  This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.

  3d-slicer-extension
  Language:Python 28

• sebastianandress / Slicer-SurfaceWrapSolidify

  3D Slicer extension which contains a Segment Editor Effect that solidifies and extracts the surface of a segmentation

  3d-slicer-extension
  Language:Python 25

• pnlbwh / ukftractography

  3d-slicer-extension
  Language:C 23

• KitwareMedical / SlicerITKUltrasound

  Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.

  ultrasound3d-slicerinsight-toolkititkarfi3d-slicer-extension
  Language:C++ 22
• SlicerBoneReconstructionPlanner

  SlicerIGT / SlicerBoneReconstructionPlanner

  3D Slicer module for planning mandible reconstruction surgery using fibula flap

  3d-slicer-extension
  Language:Python 22

• QIICR / QuantitativeReporting

  Segmentation-based measurements with DICOM import and export of the results.

  3d-slicer-extensiondicommedical-image-computingnci-itcrnci-qinnciitcrquantitative-imaging
  Language:Python 21

• fepegar / SlicerTorchIO

  3D Slicer module for TorchIO.

  3d-slicer-extension
  Language:Python 20

• Project-MONAI / SlicerMONAIViz

  MONAIViz - 3D Slicer Extension

  3d-slicer-extensionmonai
  Language:Python 20

• SenonETS / 3DSlicerTutorial_ExtensionModuleDevelopment

  SourceCode of serial tutorials on 3D Slicer extension development for beginners

  3d-slicer-extensionlaminas-api-toolslandmark-detectionlandmark-localizationlandmark-recognitionqt5qt5-guispinetutorial-sourcecodeultrasound-imagingspine-deformity3d-slicerimage-processingpythonvtk
  Language:Python 19

• SlicerRt / SlicerDebuggingTools

  Extension for 3D Slicer containing various tools for module development and debugging

  3d-slicer-extension
  Language:Python 19

• zapaishchykova / SegmentationReview

  Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created to speed up the validation process done by a clinician - the dataset loads in one batch with no need to load masks and volumes separately.

  3d-slicer-extension
  Language:Python 19

• NIRALUser / DTIPrep

  DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation

  3d-slicer-extensiondiffusion-mriquality-control
  Language:C++ 18

• QIICR / Slicer-PETDICOMExtension

  3D Slicer extension containing tools for importing DICOM PET series

  3d-slicer-extension3d-slicer
  Language:C++ 17

• ALive-research / Slicer-Liver

  3D Slicer extension for liver analysis and therapy planning

  livervisualizationanalysis3d-slicer-extensionsurgical-planning
  Language:C++ 15

• radxtools / collageradiomics

  Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

  radiomicsradiomics-feature-extractioncomputational-imagingcancer-imaging-researchcancer-imagingpythondockerfeature-extractionradiomics-features3d-slicer-extensionitcr
  Language:Python 15

• PerkLab / SlicerOpenAnatomy

  3D Slicer extension for exporting Slicer scenes to use in the OpenAnatomy.org browser

  3d-slicer-extension
  Language:Python 14

• QIICR / TCIABrowser

  3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).

  nci-qintcia-dac3d-slicer3d-slicer-extension
  Language:Python 14

• netstim / SlicerNetstim

  Collection of 3D Slicer modules mainly focused on deep brain stimulation applications.

  3d-slicer-extension
  Language:Python 13