There are 2 repositories under tractography topic.
:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Graph theory analysis of brain MRI data
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
White matter tractography clustering and more...
Method for encoding brain connectomes in multidimensional arrays (tensors).
ORG Fiber Clustering White Matter Atlas
Introduction to dMRI
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution
Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
FiberNavigator - Maxime Chamberland -
We provide a method to extract the tractographic features from structural MR images for patients with brain tumor
Scripts for MRI preprocessing
Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context
These scripts are used to generate brain surface and tract files (in .obj format, parcellated and registered) from Freesurfer recon-all and trac-all packages.
This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).
A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator
Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.
TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.
Tractography learning
Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.
Blender plugin for rendering brain tractography (.tck) files!
Along Tract Analysis of Diffusion Weighted Images