nuclei-segmentation

There are 1 repository under nuclei-segmentation topic.

stardist
stardist / stardist
StarDist - Object Detection with Star-convex Shapes
bioimage-analysis cell-segmentation nuclei-segmentation object-detection deep-learning python
Language:Python 849
computational-cell-analytics / micro-sam
Segment Anything for Microscopy
microscopy-images segment-anything segmentation cell-segmentation napari nuclei-segmentation mitochondria-segmentation
Language:Jupyter Notebook 311
okunator / cellseg_models.pytorch
Encoder-Decoder Cell and Nuclei segmentation models
accelerate ai cell-segmentation cellpose digital-pathology hovernet microscopy ml nuclei-segmentation omnipose panoptic-segmentation pytorch pytorch-lightning stardist tissue-segmentation timm
Language:Python 68
mkang315 / ASF-YOLO
Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
breast-cancer-segmentation cell-detection cell-segmentation computer-vision-algorithms data-science-bowl-2018 deep-learning-framework deep-neural-networks detection-segmentation-algorithm hematoxylin-eosin-staining histopathology-image-analysis instance-segmentation lesion-segmentation medical-image-analysis medical-image-computing medical-image-processing medical-image-segmentation nuclei-segmentation nucleus-detection yolo breast-cancer-cell
Language:Python 55
ruchikaverma-iitg / MoNuSeg
This repository contains my implementations of the algorithms which we used for evaluation of the MoNuSeg challenge at MICCAI 2018.
monuseg monuseg-challenge nuclei-segmentation
Language:Jupyter Notebook 44
stardist / stardist-napari
StarDist plugin for napari
cell-segmentation deep-learning nuclei-segmentation object-detection napari napari-plugin
Language:Python 32
Mr-TalhaIlyas / TSFD
Nuclei segmentation and classification (Cancer cells)
bifpn cancer-detection deep-learning medical-image-processing nuclei-segmentation
Language:Jupyter Notebook 21
zhenqi-he / transnuseg
MICCAI2023 - TransNuSeg: A Lightweight Multi-Task Transformer for Nuclei Segmentation
shared-attention-heads medical-image-segmentation nuclei-segmentation swin-transformer lightweight-multi-task-framework miccai2023
Language:Python 20
okunator / cellseg_gsontools
Feature extraction from GEOJson nuclei and tissue segmentation maps
digital-pathology feature-extraction morphological-analysis nuclei-segmentation spatial-data-analysis tissue-segmentation
Language:Python 11
leduckhai / Segment-White-Blood-Cell-Nuclei
An algorithm used for white blood cell nuclei segmentation
biomedical-image-processing image-segmentation nuclei-segmentation matlab
Language:MATLAB 10
QuIIL / Grad_Mix
GradMix for nuclei segmentation and classification in imbalanced pathology image datasets: MICCAI 2022
augmentation imbalanced-data nuclei-classification nuclei-segmentation sonnet
Language:Jupyter Notebook 8
vjgpt / Nuclei-Segmentation-using-Mask-RCNN
The goal is to segment individual nuclei in microscopy images.
nuclei nuclei-segmentation mask-rcnn segmentation
Language:Jupyter Notebook 7
cpathology / NucleiSegHE
H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
computational-pathology nuclei-segmentation pathomics whole-slide-imaging biomedical-image-analysis deep-learning pathology-image he-staining hover-net
Language:Python 6
vaibhavshukla182 / U_Net-for-medical-image-segmentation
Implementation of U_Net architecture for medical image segmentation purpose.
unet-image-segmentation unet unet-keras unet-tensorflow medical-imaging nuclei-segmentation segementation
Language:Python 5
karvla / histosnet
Predicting breast cancer outcomes using ML.
breast-cancer nuclei-segmentation unet
Language:Jupyter Notebook 4
CielAl / hovernet_lite
compact version of the official hovernet impl in pytorch
deep-learning hover-net hovernet nuclei-segmentation pytorch
Language:Python 3
xq141839 / MSAU-Net
MICCAI-COMPAY-2021: An automatic nuclei image segmentation based on multi-scale split-attention u-net
nuclei-segmentation
Language:Python 3
Atishaysjain / WSI-Nuclear-Segmentation
Performs instance segmentation and classification of nuclei in Multi-Tissue Histology WSIs(generally 100k*100k pixels).
deep-learning medical-image-processing nuclei-classification nuclei-segmentation whole-slide-image
Language:Jupyter Notebook 1
hassanlougithub / Nuclei-Segmentation
Nuclei Segmentation using ResUNet
keras nuclei-segmentation resunet unet
Language:Jupyter Notebook 1
mltraore / CompSegNet
CompSegNet: An enhanced U-shaped architecture for nuclei segmentation in H&E histopathology images
computational-pathology convolutional-neural-networks deep-learning nuclei-segmentation receptive-fields transformers global-context-modeling gcnet moblilenetv2 residual-bottleneck-transformer
Language:Python 1
MultimodalImagingCenter / MIC-MAQ
MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection
cell-segmentation cellpose deep-learning fiji-plugin high-content-imaging image-processing image-segmentation nuclei-segmentation foci-detection
Language:Java 1
aditya-10012002 / Nuclei-Segmentation-Using-Stardist
NUCLEI SEGMENTATION USING STARDIST AND PYTHON IN GOOGLE COLAB
computer-vision conda fuji machine-learning nuclei-segmentation python3 stardist
Language:Jupyter Notebook 0
femartip / Nuclei-Segmentation
Using Deep Learning techniques for nuclei segmentation. Data extracted from Kaggle competition 2018 Data Science Bowl
deep-learning nuclei-segmentation
Language:Jupyter Notebook 0
ilyacarey / nuclei
ImageJ scripts for: (a) batch opening confocal files with two channels and merging them and (b) for a batch of confocal images with two channels, identifying nuclei as ROIs using one channel and quantifying the mean pixel intensity of each ROI using the other channel, and outputting results in Excel. Requirements and assumptions are in comments.
nuclei-detection nuclei-segmentation nuclei-quantification imagej imagej-macro
Language:ImageJ Macro 0
JanRibasGarriga / WhoIsWho
WhoIsWho is Google Colab-based tool that aims to classify cells based on features related to their nuclei and their neighbours.
artificial-learning machine-learning deep-learning microscopy microscope nuclei-segmentation nuclei-detection nuclei-classification
Language:Jupyter Notebook 0
love124356 / Nuclei-segmentation
Selected Topics in Visual Recognition using Deep Learning, NYCU. CodaLab competition - Instance Segmentation
instance-segmentation nuclei-segmentation
Language:Python 0
saeid436 / Image-Segmentation-Unet
Nucleia image segmentation with U-net...
u-net-keras image-segmentation-tensorflow nuclei-segmentation convolutional-neural-networks tensorflow image-processing deep-neural-networks deep-learning
Language:Python 0
harshaljanjani / StarDist-PyTorch
A PyTorch Implementation of the StarDist Nuclei Segmentation Architecture
cancer-research nuclei-segmentation pytorch
Language:Python
tuanle618 / image-segmentation
Implementation of image segmentation networks using pytorch.
image-segmentation kaggle nuclei-segmentation python pytorch-implementation tiramisu u-net
Language:Jupyter Notebook

nuclei-segmentation

stardist / stardist

computational-cell-analytics / micro-sam

okunator / cellseg_models.pytorch

mkang315 / ASF-YOLO

ruchikaverma-iitg / MoNuSeg

stardist / stardist-napari

Mr-TalhaIlyas / TSFD

zhenqi-he / transnuseg

okunator / cellseg_gsontools

leduckhai / Segment-White-Blood-Cell-Nuclei

QuIIL / Grad_Mix

vjgpt / Nuclei-Segmentation-using-Mask-RCNN

cpathology / NucleiSegHE

vaibhavshukla182 / U_Net-for-medical-image-segmentation

karvla / histosnet

CielAl / hovernet_lite

xq141839 / MSAU-Net

Atishaysjain / WSI-Nuclear-Segmentation

hassanlougithub / Nuclei-Segmentation

mltraore / CompSegNet

MultimodalImagingCenter / MIC-MAQ

aditya-10012002 / Nuclei-Segmentation-Using-Stardist

femartip / Nuclei-Segmentation

ilyacarey / nuclei

JanRibasGarriga / WhoIsWho

love124356 / Nuclei-segmentation

saeid436 / Image-Segmentation-Unet

harshaljanjani / StarDist-PyTorch

tuanle618 / image-segmentation