histopathology-image-analysis

There are 0 repository under histopathology-image-analysis topic.

ChongQingNoSubway / PDL
Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "
multiple-instance-learning histopathology histopathology-image-analysis histopathology-images tumor-detection weakly-supervised-learning whole-slide-image whole-slide-imaging
Language:Python 112
mkang315 / ASF-YOLO
Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
breast-cancer-segmentation cell-detection cell-segmentation computer-vision-algorithms data-science-bowl-2018 deep-learning-framework deep-neural-networks detection-segmentation-algorithm hematoxylin-eosin-staining histopathology-image-analysis instance-segmentation lesion-segmentation medical-image-analysis medical-image-computing medical-image-processing medical-image-segmentation nuclei-segmentation nucleus-detection yolo breast-cancer-cell
Language:Python 49
liupei101 / Pipeline-Processing-TCGA-Slides-for-MIL
This repo provides an exhaustive pipeline of processing TCGA whole-slide images for downstream multiple instance learning.
histopathology-image-analysis multiple-instance-learning tcga whole-slide-imaging
Language:Python 21
secrierlab / HistoMIL
A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
deep-learning histopathology-image-analysis
Language:Python 21
PerceptionComputingLab / ULTRA
[MedIA2023 & MICCAI2022 ] Ambiguity-aware breast tumor cellularity estimation via self-ensemble label distribution learning
brest-cancer-prediction histopathology-image-analysis label-distribution-learning neoadjuvant-treatment tumour-cellularity-estimation
Language:Python 8
lely475 / ocelot23algo
Approach that won 3rd place in the OCELOT 2023 Challenge. Multi-organ H&E-based deep learning model for cell detection, applicable for tumor cellularity/ purity/ content estimation.
cell-detection histopathology histopathology-image-analysis tumor-purity-estimation tumor-cellularity-estimation histology
Language:Python 7
QuIIL / KBSMC_colon_cancer_grading_dataset
KBSMC colon cancer grading dataset repository
cancer-grading colon-cancer histopathology-image-analysis
Language:Python 7
Zhengyushan / lagenet
The code for LAGE-Net
histopathology-images histopathology-image-analysis wsi whole-slide-image histopathology-image-retrieval
Language:Python 7
WkEEn / PAMA
PAMA: Position-aware masked autoencoder for histopathology WSI representation learning
histopathology-image-analysis representation-learning self-supervised-learning wsi wsi-images miccai2023
Language:Python 4
DBO-DKFZ / multistain_cyclegan_normalization
Implementation of MultiStain-CycleGAN
cyclegan-pytorch histopathology-image-analysis normalization stain
Language:Python 3
ajinkya-kulkarni / PySpatialHistologyAnalysis
Package using StarDist and Python that performs object detection and spatial analysis on H&E images
histopathology histopathology-image-analysis stardist image-processing segmentation spatial-analysis digital-histology python
Language:Python 2
ceyxasm / histopathologic-cancer-detection
In this project, we perform exploratory analysis on the data and try out different models to give the best results.
cancer-detection cnn-classification histopathology-image-analysis pca-analysis resampling-methods
Language:Jupyter Notebook 2
lely475 / CTPLab_SemiCOL2023
DL-model for multi-class tissue segmentation in colorectal cancer H&E slides, developed as part of the SemiCOL2023 Challenge.
colorectal-cancer histopathology histopathology-image-analysis multi-task-learning tissue-segmentation
Language:Python 2
open-pathology / awesome-pathology
Awesome List of Digital and Computational Pathology Resources
awesome awesome-list computational-pathology digital-pathology pathology whole-slide-imaging heathcare histopathology histopathology-image-analysis histopathology-images histopathology-wsi
1
StonyBrookDB / igt-wsi
Repository for "Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification""
graph-transformer histopathology-image-analysis multiple-instance-learning weakly-supervised-learning whole-slide-image computational-pathology
1
AnirbitGhosh / L4-Project
Project title: Using Deep Learning to predict overall survival times for breast cancer from H&E whole slide biopsy
convolutional-neural-networks deep-learning histopathology-image-analysis machine-learning openslide python pytorch
Language:TeX 0
nedaghohabi / Histopathology-Image-Tiling
tessellating tumor area in whole slide images into square tiles
annotation-tool biomedical-image-processing histopathology-image-analysis tiling-scripts
0
niccolo99mandelli / SOPHYSM.jl
SOPHYSM - SOlid tumors PHYlogenetic Spatial Modeller - Julia GUI for Histological Analysis and Cancer Simulation
cancer-imaging-research cdsa histopathology-image-analysis image-processing simulator tcga-data jhistint jspace
Language:Julia 0