nifti

There are 1 repository under nifti topic.

libvips / libvips
A fast image processing library with low memory needs.
libvips jpeg openslide imagemagick tiff gif webp graphicsmagick openexr c pdfium heic cpp svg pdf png nifti image-processing
Language:C 9357
rordenlab / dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
dicom nifti mri mri-images research neuroscience neuroimaging jpeg-image jpeg dicom-images dcm nii gz nitrc dcm2niix mricrogl bids-format nifti-format
Language:C++ 833
FNNDSC / ami
AMI Medical Imaging (AMI) JS ToolKit
medical javascript threejs ami volume-rendering dicom-images dicom nifti-format nrrd nifti vtk stl trk fs webgl xtk
Language:JavaScript 709
nipy / nibabel
Python package to access a cacophony of neuro-imaging file formats
python neuroimaging brain-imaging nifti gifti cifti-2 streamlines data-formats dicom tck trk afni-brik-head ecat minc
Language:Python 636
jibikbam / CNN-3D-images-Tensorflow
3D image classification using CNN (Convolutional Neural Network)
cnn 3d mri medical tensorflow neural-network dti nifti convolutional-neural-networks classification
Language:Python 257
niivue / niivue
a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.
image nifti niivue viewer web webgl2
Language:TypeScript 234
rordenlab / MRIcroGL
v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
volume-rendering dicom dicom-viewer visualization glsl mricrogl nifti opengl volume-renderings lazarus bids-format
Language:Python 190
Washington-University / workbench
Connectome Workbench
c-plus-plus neuroscience mri cifti nifti gifti
Language:C++ 179
NIfTI-Image-Converter
alexlaurence / NIfTI-Image-Converter
🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users
convert-images converter matlab medical-imaging neuroimaging nifti opencv png python
Language:Python 116
fitushar / 3D-GuidedGradCAM-for-Medical-Imaging
This Repo containes the implemnetation of generating Guided-GradCAM for 3D medical Imaging using Nifti file in tensorflow 2.0. Different input files can be used in that case need to edit the input to the Guided-gradCAM model.
3d-guided-grad-cam 3d-models cnn-visualization cnn-visualization-technique ctci explainable-ai explainable-ai-in-medical-imaging explainable-artificial-intelligence guided-grad-cam medical-imaging nifti tensorflow-examples tensorflow2
Language:Python 96
bioimagesuiteweb / bisweb
This is the repository for the BioImage Suite Web Project
webassembly neuroimaging-analysis medical image-processing nifti viewer fmri nih-brain-initiative
Language:JavaScript 77
JuliaNeuroscience / NIfTI.jl
Julia module for reading/writing NIfTI MRI files
nifti julia mri-images fmri mri
Language:Julia 71
spm / spm
SPM (Statistical Parametric Mapping) - Development Version
matlab neuroscience neuroimaging spm eeg fmri meg pet spect mapping parametric statistical opm nifti brain dcm vbm
Language:MATLAB 65
jcreinhold / niftidataset
pytorch dataset class for reading and transforming NIfTI files
pytorch nifti mri
Language:Jupyter Notebook 62
mfroeling / QMRITools
Processing and visualization tools for quantitative MRI data
mathematica visualization elastix dixon extended-phase-graphs diffusion dti epg nifti ivim noise-suppression denoising registration relaxometry spectroscopy tractography jcoupling nii muscle fasculation
Language:Mathematica 58
tomaroberts / nii2dcm
nii2dcm: NIfTI to DICOM creation with Python
dcm dicom dicom-images file-conversion gz imaging mri mri-images nifti nifti-format nii research
Language:Python 53
volBrain / AssemblyNet
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
neuroscience neuroimaging brain-imaging medical-imaging deep-learning neuroanatomy brain-segmentation mri mri-segmentation nifti neurodegenerative-diseases dementia alzheimer parkinson schizophrenia autism docker
46
osparc-iseg
ITISFoundation / osparc-iseg
The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data
anatomical-models c-plus-plus dicom image-processing itk medical-image-processing medical-image-segmentation medical-imaging nifti plugins
Language:C++ 42
anibalsolon / vscode-neuro-viewer
Check metadata and visualize neuroimages within VSCode.
brainweb data-visualization neuroimaging neuroscience nifti vscode vscode-extension
Language:TypeScript 41
Enet4 / nifti-rs
Rust implementation of the NIfTI-1 format
hacktoberfest medical-imaging neuroimaging nifti nifti-format rust
Language:Rust 39
ericspod / Eidolon
Biomedical Visualization and Analysis Framework
python biomedical rendering data-analysis data-visualization king-college-london medical-imaging medical-image-computing image-registration irtk mirtk pyqt4 ogre3d dicom nifti brc 3d-graphics visualization
Language:Python 38
bhklab / med-imagetools
Transparent and reproducible medical image processing pipelines in Python.
medical python deep-learning dicom pytorch torch nrrd nifti machine-learning
Language:Python 31
lamyj / dicomifier
A medical image converter
dicom bruker nifti conversion mri medical-imaging
Language:Python 30
brainlife / ezbids
A web service for semi-automated conversion of raw imaging data to BIDS
bids-converter mri neuroimaging nifti web bids dicom interoperability brain-imaging data-curation
Language:Vue 24
MahsaShk / MeshProcessing
Convert binary map to mesh. The binary map is in nifti format and the mesh is in stl file type.
nii2stl binarymap2mesh vtk stl nifti segmentation convert nii mesh binary mask volume surface
Language:Python 24
pyvoxel / pyvoxel
Fast Pythonic data structures and tools for wrangling medical images.
deep-learning dicom dicom-viewer machine-learning medical-imaging nifti
Language:Python 24
neurolabusc / MRIcro
macOS Xcode GLSL Volume Render for NIfTI, Bio-Rad Pic, NRRD, Philips, ITK MetaImage, AFNI, Freesurfer, DICOM images.
dicom nifti volume-renderer
Language:C++ 22
ofgulban / iphigen
A command-line program for n-dimensional image enhancement and color balancing.
image-processing color-balance nifti mri
Language:Python 22
Washington-University / CiftiLib
C++ Library for reading and writing CIFTI-2 and CIFTI-1 files
c-plus-plus cifti nifti cifti-format fmri-cifti-data hcp
Language:C++ 14
hanayik / niivue
a WebGL2 based NIFTI volume viewer.
webgl nifti volume mri vuejs neuroimaging
Language:JavaScript 11
lamyj / erwin
Quantitative MRI toolbox in Python
quantitative mri field-mapping cbf diffusion-mri motion-correction magnetization-transfer quantitative-susceptibility-mapping segmentation relaxometry mrtrix3 ants fsl nifti
Language:Python 11
brainglobe / imio
Loading and saving of image data.
image-processing loading nifti saving tiff tiff-series
Language:Python 10
deepc-health / nekton
A python package for DICOM to NifTi and NifTi to DICOM-SEG and GSPS conversion
nifti nifti-format dicom gsps dicom-seg medical-imaging
Language:Python 10
plwp / Nifti.NET
A basic library for reading, writing and manipulating NIfTI files.
nifti nifti-format dotnet-standard
Language:C# 10
dmascali / BrainSlicer
Visualize and print volumetric brain data
axial brain colormaps coronal layers maps matlab nifti overlay print publication-quality-plots sagittal-plane visualization
Language:MATLAB 9
okieraised / gonii
Standalone NIfTI file parser
medical-imaging nifti-1 nifti-2 nifti-format nifti-gz nifti-images nifti nii
Language:Go 8