biomedical-image-analysis

There are 5 repositories under biomedical-image-analysis topic.

sinAshish / Multi-Scale-Attention
Code for our paper "Multi-scale Guided Attention for Medical Image Segmentation"
pytorch deep-learning biomedical-image-analysis attention-mechanism encoder-decoder
Language:Python 445
DeepBrainSeg
koriavinash1 / DeepBrainSeg
Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
biomedical-image-analysis deep-learning brats ensemble-learning deep-convolutional-neural-networks brain-tumor-segmentation segmentation artificial-intelligence medical-image-analysis brain-segmentation brain-tumor
Language:Python 179
anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
image-recognition image-detection convolutional-neural-networks keras keras-tensorflow tensorflow inception inceptionv3 imagenet deep-convolutional-networks pneumonia-detection chest-xray-images biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-analysis medical-image-computing medical-application
Language:Jupyter Notebook 133
anjanatiha / Cancer-Detection-from-Microscopic-Tissue-Images-with-Deep-Learning
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
biomedical-applications biomedical-image-analysis biomedical-image-processing cancer-detection convolutional-neural-network deep-learning image-classification image-recognition keras keras-tensorflow medical-application medical-image-analysis medical-image-computing medical-image-processing medical-imaging microscopic-images nasnet nasnet-models nasnetmobile
Language:Jupyter Notebook 28
sraashis / retinal-fundus-transfer
An example of easytorch implementation on retinal vessel segmentation.
vessel-segmentation easy-neural-network-experiments biomedical-image-analysis pool-image-datasets k-fold-cross-validation u-net u-net-pytorch pytorch-k-fold-cross-validation transfer-learning retinal-vessel-segmentation
Language:Python 25
cjerzak / causalimages-software
causalimages: An R package for performing causal inference with image and image sequence data
biomedical-image-analysis causal-inference computer-vision earth-observation machine-learning equinox jax
Language:R 15
Pramod04121999 / Brain-Tumor-Segmentation
Fully automatic brain tumor segmentation using the Modified 3DUNet architecture for Brats 2020 Challenge.
deep-learning brain-tumor-segmentation brats-challenge medical-image-analysis biomedical-image-analysis unet-3d
Language:Jupyter Notebook 15
luisvalesilva / wsipre
Handling whole-slide images with region-level annotations.
python-library whole-slide-imaging virtual-slide biomedical-image-processing biomedical-image-analysis
Language:Jupyter Notebook 9
yunyuntsai / BraTS-brain-tumer-segmentation
Code for brain tumor segmentaion
pytorch biomedical-image-analysis brats brain-tumor-segmentation computer-vision
Language:Jupyter Notebook 8
awcasella / Imagens-Biomedicas-UNIFESP-SJC-EngBio
This repository contains all the image processing algorithms studied in discipline "Imagens Biomédicas" of Biomedical Engineering course at UNIFESP in the first semester of 2017. All the algorithms are written in both MatLab and Python Languages.
python3 matlab unifesp image-processing medical-imaging medical-image-processing biomedical-image-processing biomedical-engineering biomedical-image-analysis engenharia-biomedica processamento-de-imagens processamento-digital-de-sinais processamento-digital-imagens
Language:MATLAB 6
cpathology / NucleiSegHE
H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
computational-pathology nuclei-segmentation pathomics whole-slide-imaging biomedical-image-analysis deep-learning pathology-image he-staining hover-net
Language:Python 6
koriavinash1 / PAC18
sMRI based depression classification using 3D volumetric convolutional networks
deep-learning neuroscience convolutional-neural-networks artificial-intelligence ai-in-medicine biomedical-image-analysis ai depression-analysis classification
Language:Python 4
sweetpand / Tensorflow_Best_practices
Biomedical Image Analysis with TensorFlow and DLTK
tensorflow tensorflow-mri tensorflow-models tensorflow-experiments tensorflow-lite dltk biomedical-image-analysis biomedical-engineering biomedical-image-processing biomedical-signal-processing
Language:Python 4
AIandGlobalDevelopmentLab / causalimages-software
causalimages: An R package for performing causal inference with image and image sequence data
biomedical-image-analysis causal-inference computer-vision machine-learning
Language:R 3
awcasella / Calculo-Numerico-UNIFESP-SJC-EngBio
This repository contains all the algorithms studied in discipline "Calculo Numerico" of Biomedical Engineering course at UNIFESP in the second semester of 2018.
numerical-methods numerical-integration numerical-algorithms calculo-numerico unifesp engenharia-biomedica biomedical-engineering biomedical-data-science biomedical-image-processing biomedical-image-analysis biomedical-signal-processing biomedical-applications
Language:MATLAB 3
amarrammadhu / Biomedical-Engineering-
My assignments and projects concerned with Biomedical Engineering
biomedical-engineering biomedical-image-processing biomedical-data-science biomedical-informatics biomedical-image-analysis biomedical-research software-engineering
Language:TeX 2
awcasella / Engenharia-Medica-Aplicada-UNIFESP-SJC-EngBio
This repository contains all the machine learning algorithms studied in discipline "Engenharia Médica Aplicada" of Biomedical Engineering course at UNIFESP in the second semester of 2018. All the algorithms are written in both MatLab and Python Languages.
machine-learning machine-learning-algorithms python matlab unifesp engenharia-biomedica biomedical-data-science biomedical-engineering biomedical-signal-processing biomedical-image-processing biomedical-image-analysis classification-algorithms feature-extraction feature-selection dimensionality-reduction
Language:MATLAB 2
AniketP04 / Brain_Tumor_Detection
biomedical-image-analysis
Language:Jupyter Notebook 1
anjanatiha / Malaria-Parasite-Detection-in-Thin-Blood-Smear-Images-with-Convolutional-Neural-Networks
Malaria Detection from Cell Images using Deep Learning - NasNetMobile Model
biomedical-applications biomedical-image-analysis biomedical-image-processing computer-vision convolutional-neural-network deep-learning deep-neural-networks image-classification image-recognition machine-learning medical-application medical-image-analysis medical-image-computing medical-image-processing medical-imaging nasnet nasnetmobile
Language:Jupyter Notebook 1
awcasella / Template-TCC-LaTeX-UNIFESP-SJC-EngBio
Template LaTeX de TCC Engenharia Biomédica da UNIFESP-SJC.
latex latex-template tcc template engenharia-biomedica biomedical-engineering biomedical-data-science biomedical-image-processing biomedical-image-analysis biomedical-instrumentation biomedical-signal-processing unifesp
Language:TeX 1
fluffy
BBQuercus / fluffy
Deep learning for cellular and sub-cellular segmentation made easy.
segmentation docker deep-learning interface biomedical-image-analysis
Language:JavaScript 1
cpathology / LungEvolutionPathomics
Lung Preneoplasia Progression via Pathomics
biomedical-image-analysis computational-pathology lung-cancer pathology-image pathomics lung-preneoplasia neoplasm-evolution
Language:Python 1
fmi-basel / gchao-koopa
Keenly optimized obliging picture analysis
bioinformatics biomedical-image-analysis cli
Language:Python 1
mcha0019 / Cell-Detection-and-Segmentation
An entry to the ISBI 2021 Cell Tracking Challenge that uses a Mask R-CNN neural network to detect and segment cells in 2D and 3D microscopy
biomedical-image-analysis convolutional-neural-networks machine-learning image-segmentation cell-segmentation computer-vision deep-learning biomedical-image-processing bioinformatics
Language:Jupyter Notebook 1
sid321axn / detecting-corona-using-Modified-Xceptionet
Detecting of COVID-19 induced Pneumonia in Chest X-ray Images using using Modified XceptionNet
image-recognition convolutional-neural-networks xception-model covid-19 covid-19-data chest-xray-images chest-xrays biomedical-image-analysis pneumonia-detection pneumoniac-xray pneumonia-detection-webapp keras-tensorflow keras deep-neural-networks biomedical-applications radiology-machine-learning medical-imaging medical-image-analysis deep-convolutional-neural-networks
Language:Jupyter Notebook 1
gauriprdhn / Lung-Cancer-Nodule-Detection-Using-Low-Memory-Neural-Networks
Term Project on LIDC (Lung Cancer CT Scan) dataset
lung-cancer-detection image-classification data-mining biomedical-image-analysis
0
genchandenur / Brain-Tumor-Segmentation-using-U2-Net
Brain Tumor Segmentation using U2-Net Architecture
brain-tumor-segmentation deep-learning image-segmentation segmentation tensorflow biomedical-image-analysis u2net opencv-python keras-tensorflow
Language:Jupyter Notebook 0
amirezzati / iabi
Intelligent analysis of Biomedical images course
computer-vision deep-learning image-processing machine-learning generative-adversarial-network graph-neural-networks image-registration medical-imaging multiple-instance-learning biomedical-image-analysis diffusion-models vision-transformer
Language:Jupyter Notebook
reshalfahsi / MSGNet
Modified MobileNet-ShuffleNet-GhostNet Network for Lightweight Retinal Vessel Segmentation
biomedical-engineering biomedical-image-analysis biomedical-image-processing image-segmentation medical-image-segmentation pytorch
Language:Python

biomedical-image-analysis

sinAshish / Multi-Scale-Attention

koriavinash1 / DeepBrainSeg

anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning

anjanatiha / Cancer-Detection-from-Microscopic-Tissue-Images-with-Deep-Learning

sraashis / retinal-fundus-transfer

cjerzak / causalimages-software

Pramod04121999 / Brain-Tumor-Segmentation

luisvalesilva / wsipre

yunyuntsai / BraTS-brain-tumer-segmentation

awcasella / Imagens-Biomedicas-UNIFESP-SJC-EngBio

cpathology / NucleiSegHE

koriavinash1 / PAC18

sweetpand / Tensorflow_Best_practices

AIandGlobalDevelopmentLab / causalimages-software

awcasella / Calculo-Numerico-UNIFESP-SJC-EngBio

amarrammadhu / Biomedical-Engineering-

awcasella / Engenharia-Medica-Aplicada-UNIFESP-SJC-EngBio

AniketP04 / Brain_Tumor_Detection

anjanatiha / Malaria-Parasite-Detection-in-Thin-Blood-Smear-Images-with-Convolutional-Neural-Networks

awcasella / Template-TCC-LaTeX-UNIFESP-SJC-EngBio

BBQuercus / fluffy

cpathology / LungEvolutionPathomics

fmi-basel / gchao-koopa

mcha0019 / Cell-Detection-and-Segmentation

sid321axn / detecting-corona-using-Modified-Xceptionet

gauriprdhn / Lung-Cancer-Nodule-Detection-Using-Low-Memory-Neural-Networks

genchandenur / Brain-Tumor-Segmentation-using-U2-Net

amirezzati / iabi

reshalfahsi / MSGNet