medical-image-segmentation

There are 48 repositories under medical-image-segmentation topic.

PaddlePaddle / PaddleSeg
Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.
semantic-segmentation image-segmentation image-matting interactive-segmentation panoptic-segmentation transformer lane-detection autonomous-driving human-segmentation video-segmentation medical-image-segmentation
Language:Python 8307
open-mmlab / mmsegmentation
OpenMMLab Semantic Segmentation Toolbox and Benchmark.
semantic-segmentation pytorch pspnet deeplabv3 transformer swin-transformer realtime-segmentation vessel-segmentation retinal-vessel-segmentation image-segmentation medical-image-segmentation
Language:Python 7516
MedicalZooPytorch
black0017 / MedicalZooPytorch
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
segmentation deep-learning pytorch medical-imaging medical-image-processing medical-image-segmentation 3d-convolutional-network brats2019 brats2018 densenet resnet iseg-challenge iseg mrbrains18 unet unet-image-segmentation segmentation-models
Language:Python 1629
awesome-transformers-in-medical-imaging
fahadshamshad / awesome-transformers-in-medical-imaging
A collection of resources on applications of Transformers in Medical Imaging.
awesome-list brain-tumor-segmentation brats2021 clinical-report covid-19 deep-neural-networks medical-image-analysis medical-image-classification medical-image-detection medical-image-reconstruction medical-image-registration medical-image-segmentation medical-image-synthesis medical-imaging medical-report-generate transformers vision-transformers
1121
AngeLouCN / Min_Max_Similarity
A contrastive learning based semi-supervised segmentation network for medical image segmentation
contrastive-learning semi-supervised-learning medical-image-segmentation surgical-tools-segmentation medical-video-analysis video-segmentation
Language:Python 1001
rezazad68 / BCDU-Net
BCDU-Net : Medical Image Segmentation
lstm unet-keras abcdu-net segmentation medical-image-processing medical-image-segmentation lung-segmentation skin-lesion-segmentation retinal-vessel-segmentation deep-learning convolutional-autoencoder convolutional-neural-networks medical medical-application cancer-detection semantic semantic-segmentation bcdu-net unet keras
Language:Python 686
AngeLouCN / CaraNet
Context Axial Reverse Attention Network for Small Medical Objects Segmentation
attention-mechanism context medical-image-segmentation small-object-segmentation
Language:Python 457
jeya-maria-jose / UNeXt-pytorch
Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022
deep-learning medical-image-segmentation medical-imaging mlp segmentation unet unet-image-segmentation
Language:Python 441
DengPingFan / PraNet
PraNet: Parallel Reverse Attention Network for Polyp Segmentation, MICCAI 2020 (Oral). Code using Jittor Framework is available.
deep-learning medical-image-segmentation polyp-segmentation reverse-attention
Language:Python 409
frankkramer-lab / MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
deep-learning convolutional-neural-networks medical-image-processing medical-image-segmentation framework computer-vision clinical-decision-support tensorflow medical-image-analysis medical-imaging segmentation neural-network pip healthcare-imaging
Language:Python 397
Rubics-Xuan / TransBTS
This repo provides the official code for : 1) TransBTS: Multimodal Brain Tumor Segmentation Using Transformer (https://arxiv.org/abs/2103.04430) , accepted by MICCAI2021. 2) TransBTSV2: Towards Better and More Efficient Volumetric Segmentation of Medical Images(https://arxiv.org/abs/2201.12785).
medical-image-segmentation pytorch transformer
Language:Python 374
jeya-maria-jose / KiU-Net-pytorch
Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI
brats deep-learning deep-neural-networks kiunet lits-challenge medical-image-segmentation medical-imaging pytorch segmentation semantic-segmentation
Language:Python 348
AngeLouCN / DC-UNet
We proposed a novel U-Net-based model -- DC-UNet to do medical image segmentation.
dc-unet medical-image-segmentation keras-tensorflow python3 dcunet pytorch segmentation
Language:Python 317
AngeLouCN / CFPNet-Medicine
CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation
medical-image-segmentation real-time-semantic-segmentation keras python3 pytorch segmentation
Language:Python 282
MIC-DKFZ / MedNeXt
MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).
convnext medical-image-analysis medical-image-segmentation medical-imaging transformers unet-image-segmentation mednext
Language:Python 262
yhygao / CBIM-Medical-Image-Segmentation
A PyTorch framework for medical image segmentation
deep-learning medical-image-segmentation medical-imaging pytorch segmentation
Language:Python 235
uni-medical / STU-Net
The largest pre-trained medical image segmentation model (1.4B parameters) based on the largest public dataset (>100k annotations), up until April 2023.
foundation-models medical-image-segmentation pretrained-models
Language:Python 230
NITR098 / Awesome-U-Net
Official repo for Medical Image Segmentation Review: The success of U-Net
medical-image-processing medical-image-segmentation segmentation-models transformer u-net unet-image-segmentation unet-pytorch
Language:Jupyter Notebook 224
HiLab-git / WSL4MIS
Scribbles or Points-based weakly-supervised learning for medical image segmentation, a strong baseline, and tutorial for research and application.
medical-image-segmentation weakly-supervised-learning weakly-supervised-segmentation
Language:Python 188
wurenkai / UltraLight-VM-UNet
[arXiv] The official code for "UltraLight VM-UNet: Parallel Vision Mamba Significantly Reduces Parameters for Skin Lesion Segmentation".
image-segmentation medical-image-processing medical-image-segmentation
Language:Python 171
DebeshJha / ResUNetPlusPlus
Official code for ResUNetplusplus for medical image segmentation (TensorFlow & Pytorch implementation)
unet tensorflow image-segmentation medical-image-segmentation unet-model resunet-architecture resunet resunet-plus-plus aspp attention residual-networks squeeze-and-excitation conv2d pytorch pytorch-implementation
Language:Python 163
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano mri neural-networks neuroimage neuroimaging deep-learning-algorithms deep-neural-networks brain-segmentation medical-image-segmentation medical-image-analysis
Language:Python 161
lescientifik / open_brats2020
Top 10 brats 2020 Solution
deep-learning semantic-segmentation medical-imaging medical-image-segmentation pytorch unet brats brats-challenge
Language:Python 161
GewelsJI / VPS
Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"
video-polyp-segmentation video-object-segmentation awesome-polyp-segmentation polyp-segmentation colonoscopy medical-image-segmentation medical-image-analysis pytorch deep-learning jittor
Language:Python 159
josedolz / HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
3d-cnn 3d-convolutional-network brain-segmentation cnn convolutional-neural-networks deep-learning deep-learning-algorithms deep-neural-networks densenet fcn hyperdensenet image-segmentation medical-image-analysis medical-image-processing medical-image-segmentation multi-modal-imaging neural-networks segment-medical-images segmentation theano
Language:Python 147
xmindflow / Awesome-Transformer-in-Medical-Imaging
[MedIA Journal] An ultimately comprehensive paper list of Vision Transformer/Attention, including papers, codes, and related websites
attention-mechanism awesome-list computer-vision deep-learning medical-image-segmentation segmentation transformer transformers vision-transformer vit
140
tamasino52 / UNETR
Unofficial code base for UNETR: Transformers for 3D Medical Image Segmentation
3d-medical-imaging-segmentation semantic-segmentation medical-image-segmentation
Language:Python 134
xmindflow / Awesome-Implicit-Neural-Representations-in-Medical-imaging
[ICCV 2023] A curated list of resources on implicit neural representations in Medical Imaging
compression implicit-neural-representation inr medical nerf rendering segmentation reconstruction registration synthesis deep-learning medical-image-reconstruction medical-image-registration medical-image-segmentation medical-image-synthesis medical-imaging neural-rendering
133
HiLab-git / WORD
[MedIA2022]WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image
abdominal-organ-dataset annotation-efficient-learning dataset deep-learning medical-image-segmentation
Language:Python 131
plemeri / UACANet
Official PyTorch implementation of UACANet: Uncertainty Augmented Context Attention for Polyp Segmentation (ACMMM 2021)
acmmm2021 medical-image-segmentation polyp-segmentation
Language:Python 128
Bala93 / Multi-task-deep-network
Usage of Multi-task deep learning network for semantic segmentation in medical images
deep-learning medical-image-segmentation pytorch
Language:Python 121
openmedlab / STU-Net
The largest pre-trained medical image segmentation model (1.4B parameters) based on the largest public dataset (>100k annotations) to date.
foundation-models medical-image-segmentation pretrained-models
111
amirhossein-kz / HiFormer
HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation (WACV 2023)
medical-image-segmentation transformers cell-segmentation multi-organ-segmentation semantic-segmentation skin-lesion-segmentation segpc cell-segmenation
Language:Jupyter Notebook 110
twni2016 / OrganSegRSTN_PyTorch
PyTorch implementation of OrganSegRSTN - CVPR 2018
medical-image-segmentation pytorch coarse-to-fine
Language:Python 105
pykao / BraTS2018-tumor-segmentation
We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.
deepmedic pytorch pytorch-deepmedic pytorch-3d-unet brain-tumor-segmentaiton brats medical-image-segmentation 3d-unet deep-learning deep-neural-networks
Language:Python 103
frankkramer-lab / miseval
a metric library for Medical Image Segmentation EVALuation
evaluaton medical-image-segmentation metrics pip python reproducibility segmentation statistics
Language:Jupyter Notebook 100

medical-image-segmentation

PaddlePaddle / PaddleSeg

open-mmlab / mmsegmentation

black0017 / MedicalZooPytorch

fahadshamshad / awesome-transformers-in-medical-imaging

AngeLouCN / Min_Max_Similarity

rezazad68 / BCDU-Net

AngeLouCN / CaraNet

jeya-maria-jose / UNeXt-pytorch

DengPingFan / PraNet

frankkramer-lab / MIScnn

Rubics-Xuan / TransBTS

jeya-maria-jose / KiU-Net-pytorch

AngeLouCN / DC-UNet

AngeLouCN / CFPNet-Medicine

MIC-DKFZ / MedNeXt

yhygao / CBIM-Medical-Image-Segmentation

uni-medical / STU-Net

NITR098 / Awesome-U-Net

HiLab-git / WSL4MIS

wurenkai / UltraLight-VM-UNet

DebeshJha / ResUNetPlusPlus

josedolz / LiviaNET

lescientifik / open_brats2020

GewelsJI / VPS

josedolz / HyperDenseNet

xmindflow / Awesome-Transformer-in-Medical-Imaging

tamasino52 / UNETR

xmindflow / Awesome-Implicit-Neural-Representations-in-Medical-imaging

HiLab-git / WORD

plemeri / UACANet

Bala93 / Multi-task-deep-network

openmedlab / STU-Net

amirhossein-kz / HiFormer

twni2016 / OrganSegRSTN_PyTorch

pykao / BraTS2018-tumor-segmentation

frankkramer-lab / miseval