medical-image-segmentation

There are 27 repositories under medical-image-segmentation topic.

PaddlePaddle / PaddleSeg
Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.
autonomous-driving human-segmentation image-matting image-segmentation interactive-segmentation lane-detection medical-image-segmentation panoptic-segmentation semantic-segmentation transformer video-segmentation
Language:Python 4836
open-mmlab / mmsegmentation
OpenMMLab Semantic Segmentation Toolbox and Benchmark.
semantic-segmentation pytorch pspnet deeplabv3 transformer swin-transformer realtime-segmentation vessel-segmentation retinal-vessel-segmentation image-segmentation medical-image-segmentation
Language:Python 3774
MedicalZooPytorch
black0017 / MedicalZooPytorch
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
segmentation deep-learning pytorch medical-imaging medical-image-processing medical-image-segmentation 3d-convolutional-network brats2019 brats2018 densenet resnet iseg-challenge iseg mrbrains18 unet unet-image-segmentation segmentation-models
Language:Python 1003
rezazad68 / BCDU-Net
BCDU-Net : Medical Image Segmentation
lstm unet-keras abcdu-net segmentation medical-image-processing medical-image-segmentation lung-segmentation skin-lesion-segmentation retinal-vessel-segmentation deep-learning convolutional-autoencoder convolutional-neural-networks medical medical-application cancer-detection semantic semantic-segmentation bcdu-net unet keras
Language:Python 467
awesome-transformers-in-medical-imaging
fahadshamshad / awesome-transformers-in-medical-imaging
A collection of resources on applications of Transformers in Medical Imaging.
awesome-list brain-tumor-segmentation brats2021 clinical-report covid-19 deep-neural-networks medical-image-analysis medical-image-classification medical-image-detection medical-image-reconstruction medical-image-registration medical-image-segmentation medical-image-synthesis medical-imaging medical-report-generate transformers vision-transformers
418
AngeLouCN / CaraNet
Context Axial Reverse Attention Network for Small Medical Objects Segmentation
attention-mechanism context medical-image-segmentation small-object-segmentation
Language:Python 379
frankkramer-lab / MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
deep-learning convolutional-neural-networks medical-image-processing medical-image-segmentation framework computer-vision clinical-decision-support tensorflow medical-image-analysis medical-imaging segmentation neural-network pip healthcare-imaging
Language:Python 309
AngeLouCN / DC-UNet
We proposed a novel U-Net-based model -- DC-UNet to do medical image segmentation.
dc-unet medical-image-segmentation keras-tensorflow python3 dcunet
Language:Python 292
AngeLouCN / CFPNet-Medicine
A keras-based real-time model for medical image segmentation (CFPNet-M)
medical-image-segmentation real-time-semantic-segmentation keras python3
Language:Python 266
jeya-maria-jose / KiU-Net-pytorch
Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI
brats deep-learning deep-neural-networks kiunet lits-challenge medical-image-segmentation medical-imaging pytorch segmentation semantic-segmentation
Language:Python 247
DengPingFan / PraNet
PraNet: Parallel Reverse Attention Network for Polyp Segmentation, MICCAI 2020 (Oral). Code using Jittor Framework is available.
deep-learning medical-image-segmentation polyp-segmentation reverse-attention
Language:Python 241
Wenxuan-1119 / TransBTS
This repo provides the official code for : 1) TransBTS: Multimodal Brain Tumor Segmentation Using Transformer (https://arxiv.org/pdf/2103.04430.pdf) , accepted by MICCAI2021. 2) TransBTSV2: Towards Better and More Efficient Volumetric Segmentation of Medical Images(https://arxiv.org/abs/2201.12785).
pytorch medical-image-segmentation transformer
Language:Python 190
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano mri neural-networks neuroimage neuroimaging deep-learning-algorithms deep-neural-networks brain-segmentation medical-image-segmentation medical-image-analysis
Language:Python 155
josedolz / HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
cnn fcn 3d-cnn convolutional-neural-networks hyperdensenet medical-image-processing segmentation image-segmentation deep-learning deep-neural-networks theano segment-medical-images 3d-convolutional-network deep-learning-algorithms brain-segmentation multi-modal-imaging densenet neural-networks medical-image-analysis medical-image-segmentation
Language:Python 138
jeya-maria-jose / UNeXt-pytorch
Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network"
segmentation medical-image-segmentation medical-imaging deep-learning unet unet-image-segmentation mlp
Language:Python 122
lescientifik / open_brats2020
Top 10 brats 2020 Solution
deep-learning semantic-segmentation medical-imaging medical-image-segmentation pytorch unet brats brats-challenge
Language:Python 98
twni2016 / OrganSegRSTN_PyTorch
PyTorch implementation of OrganSegRSTN - CVPR 2018
coarse-to-fine medical-image-segmentation pytorch
Language:Python 95
Bala93 / Multi-task-deep-network
Usage of Multi-task deep learning network for semantic segmentation in medical images
deep-learning medical-image-segmentation pytorch
Language:Python 94
kamalkraj / DATA-SCIENCE-BOWL-2018
DATA-SCIENCE-BOWL-2018 Find the nuclei in divergent images to advance medical discovery
kaggle-competition data-science-bowl-2018 keras python tensorflow u-net medical-image-segmentation jupyter-notebook google-colab colab data-science-bowl machine-learning
Language:Jupyter Notebook 87
DebeshJha / ResUNetPlusPlus
Official code for ResUNetplusplus for medical image segmentation (TensorFlow implementation) (IEEE ISM)
unet tensorflow image-segmentation medical-image-segmentation unet-model resunet-architecture resunet resunet-plus-plus aspp attention residual-networks squeeze-and-excitation conv2d
Language:Python 81
Confusezius / unet-lits-2d-pipeline
Liver Lesion Segmentation with 2D Unets
deep-learning medical-image-segmentation unet-pytorch lesion-segmentation liver-segmentation unet semantic-segmentation
Language:Python 80
pykao / BraTS2018-tumor-segmentation
We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.
deepmedic pytorch pytorch-deepmedic pytorch-3d-unet brain-tumor-segmentaiton brats medical-image-segmentation 3d-unet deep-learning deep-neural-networks
Language:Python 78
HiLab-git / WSL4MIS
Scribbles or Points-based weakly-supervised learning for medical image segmentation, a strong baseline, and tutorial for research and application.
weakly-supervised-learning weakly-supervised-segmentation medical-image-segmentation
Language:Python 63
plemeri / UACANet
Official PyTorch implementation of UACANet: Uncertainty Augmented Context Attention for Polyp Segmentation
medical-image-segmentation polyp-segmentation acmmm2021
Language:Python 62
HyperDenseNet_pytorch
josedolz / HyperDenseNet_pytorch
Pytorch version of the HyperDenseNet deep neural network for multi-modal image segmentation
3d-cnn 3d-convolutional-network deep-learning hyperdensenet image-segmentation medical-image-processing medical-image-segmentation multi-modal-imaging multi-modal-learning pytorch pytorch-cnn segmentation
Language:Python 60
junyuchen245 / Unsuprevised_Seg_via_CNN
An unsupervised (or self-supervised) loss function for binary image segmentation.
image-segmentation-tensorflow keras-tensorflow medical-image-segmentation unsupervised-learning
Language:Python 60
twni2016 / Elastic-Boundary-Projection
Elastic Boundary Projection for 3D Medical Image Segmentation - CVPR 2019
behavioral-cloning level-set-method medical-image-segmentation pytorch
Language:Python 60
SharifAmit / RVGAN
[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network
keras tensorflow retinal-vessel-segmentation vessel-segmentation gan generative-adversarial-network generative-adversarial-networks conditional-gan medical-imaging medical-image-analysis medical-image-segmentation retinal-diseases fundus fundus-image-analysis miccai
Language:Python 50
HiLab-git / ACELoss
Implementations of "Learning Euler's Elastica Model for Medical Image Segmentation"
active-contour-model medical-image-segmentation loss-functions
Language:Python 49
SabareeshIyer / Brain-tumor-detection-in-3D-MRIs-using-DCGAN
Using DCGAN for segmenting brain tumors from brain image scans
generative-adversarial-network dcgan dcgan-tensorflow gan brats medical-image-processing segmentation medical-image-segmentation
Language:Python 46
tamasino52 / UNETR
Unofficial code base for UNETR: Transformers for 3D Medical Image Segmentation
3d-medical-imaging-segmentation medical-image-segmentation semantic-segmentation
Language:Python 44
GewelsJI / VPS
Video Polyp Segmentation (VPS)
awesome-list awesome-polyp-segmentation colonoscopy deep-learning medical-image-analysis medical-image-segmentation polyp-segmentation pytorch video-object-segmentation video-polyp-segmentation
Language:Python 39
PaddleCV-SIG / MedicalSeg
MedicalSeg is an easy-to-use 3D medical image segmentation toolkit that supports the whole segmentation process. Specially, We provide data preprocessing acceleration, high precision model on COVID-19 CT scans dataset and MRISpineSeg spine dataset, and a 3D visualization demo based on itkwidgets.
deep-learning medical-image-segmentation
Language:Python 33
muellerdo / kits19.MIScnn
Kidney Tumor Segmentation Challenge 2019: MIScnn - 3D Residual U-Net
deep-learning kidney kits19 segmentation u-net medical-image-processing convolutional-neural-networks medical-image-segmentation
Language:Python 30
HiLab-git / WORD
WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image
medical-image-segmentation abdominal-organ-dataset annotation-efficient-learning
Language:Python 29
VinAIResearch / 3D-UCaps
3D-UCaps: 3D Capsules Unet for Volumetric Image Segmentation (MICCAI 2021)
capsnet capsule-network cardiac-segmentation hippocampus iseg-challenge luna16 medical-image-segmentation segcaps unet
Language:Python 26

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