mri-data

There are 2 repositories under mri-data topic.

kspace-explorer
birogeri / kspace-explorer
⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation
image-analysis kspace medical-imaging mri mri-data mri-images mri-reconstruction python
Language:Python 75
mjpyeon / pytorch-dicom-classification
Code for analyzing medical images saved as .dicom files
dicom dicom-files dicom-images medical-image-computing medical-image-processing medical-informatics mri-data mri-images
Language:Python 60
rmsouza01 / MC-MRI-Rec
calgary-campinas-team challenge deep-learning mri-brain mri-data mri-reconstruction
Language:Jupyter Notebook 51
zoukai214 / CT-Synthetic-MR-Images
input ct data use U-net method systh mri
machine-learning mri-data unetwork
Language:Python 16
MRSRL / mridata-recon
Basic reconstruction scripts for data uploaded to mridata.org
datasets mri-data mri-reconstruction
Language:Python 13
elayden / MRIqual
A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI
matlab-toolbox quality tsnr mri convert-dicoms mri-brain mri-images fmri fmri-preprocessing fmri-data-analysis quality-assurance quality-control quality-metrics quality-check quality-measures fmri-data mri-data mri-signals
Language:MATLAB 12
rastislavkopal / 3D_BRAIN_TUMOR_SEGMENTATION
Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms
mri-data 3d-volume cnn-keras u-net survival-prediction segmentation
Language:Jupyter Notebook 11
4e0n / octopus-reel
"Octopus Realtime Encephalography Lab" is the (hard) real-time networked EEG-lab framework I have developed during my PhD Thesis at Brain Research Lab of Hacettepe University Faculty of Medicine Biophysics Lab. It is meant to be a holistic golden-standard solution for all tasks of cortical source localization/networking, brain-computer interfaces and neuro-feedback applications.
classification eeg-erp source-localization mri-data tissue-classification boundary-element-method forward-modeling inverse-problems computer-network beowulf-cluster k-means-clustering fuzzy-cmeans-clustering deformable-model realtime-application debian-gnu-linux rtai qt4 opengl comedi petsc
Language:C++ 7
CyclotronResearchCentre / bidsme
Flexible bidsificator for multimodal datasets
bids mri-data dicom nifti eeg brainvision
Language:Python 7
SaiJeevanPuchakayala / BrainGazer
A CNN based algorithm with 91% accuracy for brain tumor detection.
braintumorclassification cnn cnn-keras deep-learning imutils mri-data python streamlit streamlit-webapp tensorflow brain-tumor-detection convolutional-neural-networks imagedatagenerator machine-learning medical-imaging pytorch streamlit-cloud
Language:Jupyter Notebook 6
anindox8 / 2D-RetinaNet-for-Prostate-Localization-in-mpMRI
Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.
2d-detection adc convolutional-neural-networks deep-learning dwi mri-data prostate prostate-cancer retinanet seresnet supervised-learning t2w tensorflow-estimator tensorflow-keras
Language:Python 4
DorienHuijser / MRIsharingguide
We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.
brain data-sharing mri-data netherlands open-science
4
EEG-Easy / EEG-Schizophrenia-vs-Healthy
eeg-data accuracy mri-data brain diagnosis
Language:Jupyter Notebook 3
grundm / graphCA
Code to run and analyze fMRI study of somatosensory detection task
functional-connectivity graph-theory mri-data network-analysis perception somatosensory
Language:MATLAB 3
gsroberts1 / QVT
Forked to 'github.com/uwmri/QVT'
4d-flow mri-brain mri-data pcvipr pulsatile-flow segmentation-automation vascular-flow
Language:MATLAB 3
sahityamantravadi / cs231n-final-project
Detection and removal of biases from brain MRI using adversarial architectures. This was my final project for CS 231n (Convolutional Neural Networks for Visual Recognition) at Stanford.
gan mri-data bias-detection bias-removal
Language:Jupyter Notebook 3
autism-research-centre / Normative_modeling
Normative modelling code to go along with Bethlehem et al. 2018
autism normative-modelling mri-data
Language:R 2
BeataWereszczynska / k-space_masking_for_MRI_denoising
Graduate k-space masking for MRI image denoising and blurring (on the example of Agilent FID data). (Python 3)
agilent computer-vision computervision denoising denoising-images image image-processing k-space mri mri-data mri-images python python-3 python-script python3 image-reconstruction mri-reconstruction
Language:Python 1
DeepraMazumder / MRI-Based-Dementia-Progression-Prediction
A Machine Learning project predicting dementia progression from MRI data using SVM, One-vs-Rest and One-vs-One classifiers
alzheimers dementia mri-data one-vs-one one-vs-rest svm
Language:Jupyter Notebook 1
jeevan6996 / Knee-Ligament-Tear-Assessment
A Streamlit application in Python with deep learning based models to assess ligament tear as well as the grade of the tear
computer-vision deep-learning deep-neural-networks medical-imaging mri-data python3 3dcnn convolutional-neural-networks data-augmentation knee-injuries transfer-learning
Language:Jupyter Notebook 1
Kratos997 / json_MRI_data_extraction
Extracting MRI sequence header data (Magnetic field, Echo Time, Frequency, etc.) from JSON files (.json)
json matlab mri-data neuroscience jupyter-notebook python3
Language:Jupyter Notebook 1
BeataWereszczynska / k-space_wght_msk_for_MRI_denoising
k-space weighting and masking for denoising of MRI image without blurring or losing contrast, as well as for brightening of the objects in the image with simultaneous noise reduction (on the example of Agilent FID data). (Python 3)
agilent computer-vision computervision denoising denoising-images image image-processing k-space mri mri-data mri-images mri-reconstruction python python-3 python-script python3 image-reconstruction
Language:Python 0
BeataWereszczynska / MRI_k-space-derived_details_edges
k-space based details/edges detection in MRI images with optional k-space based denoising and detail control (on the example of Agilent FID data). (Python 3)
agilent computer-vision computervision image image-analysis image-processing k-space mri mri-data mri-images python python-3 python-script python3 edge-detection image-edge-detection image-details-detection
Language:Python 0
BeataWereszczynska / Swelling_tablet_fronts_D_k_from_MRI_T2_or_img
Tool for calculating swelling tablet eroding front's diffusion rate D and the rate of the swelling k from time series of either T2-maps or MRI images in FDF or Text Image format. (Python 3)
agilent data-analysis data-visualization diffusion image image-analysis image-processing machine-learning mri mri-applications mri-data mri-images python python3 diffusion-coefficient t2-mapping mri-analysis mri-image exe jupyter-notebook
Language:Jupyter Notebook 0
BeataWereszczynska / T1wIR_to_T1wSR
Simulating T1-weighted saturation recovery MRI images for arbitrary values of TR from a set of T1-weighted inversion recovery MRI images. (Python 3)
image image-processing mri python python-script python3 agilent image-manipulation inversion-recovery mri-data mri-images python-3 simulating-data simulating-image t1-mapping t1-weighted-mri saturation-recovery
Language:Python 0
BeataWereszczynska / TI_TE_wish
Simulating T1- and T2-weighted MRI images with arbitrary values of TI or TE, respectively. (Python 3)
agilent image image-manipulation image-processing mri mri-data mri-images python python-3 python-script python3 simulating-data t1-mapping t1-weighted-mri t2-mapping t2-weighted simulating-image
Language:Python 0
BeataWereszczynska / TIandTE_wish
Calculating theoretical MRI images with both TI (T1-weighting) and TE (T2-weighting) of choice, from separate T1-weighted and T2-weighted sets of images. (Python 3)
agilent image image-manipulation image-processing inversion-recovery mri mri-data mri-images python python-3 python-script python3 simulating-data simulating-image t1-mapping t1-weighted-mri t2-mapping t2-weighted
Language:Python 0
lorenzomagazzini / meg-ctf
MATLAB code for extracting, converting and anonymising files in CTF MEG proprietary format.
matlab ctf meg data-manipulation data-anonymization data-extraction mri-data
Language:MATLAB 0
brainlife / ui-fibernavigator
Docker container for FiberNavigator for Brainlife.io
tractography diffusion-mri white-matter connectome brain neuroscience neuroscience-data mri mri-data
Language:Shell
INFN-MRI / mrtwin
Collection of virtual objects for numerical MR experiments.
mri mri-data mri-reconstruction qmri simulation
Language:Python

mri-data

birogeri / kspace-explorer

mjpyeon / pytorch-dicom-classification

rmsouza01 / MC-MRI-Rec

zoukai214 / CT-Synthetic-MR-Images

MRSRL / mridata-recon

elayden / MRIqual

rastislavkopal / 3D_BRAIN_TUMOR_SEGMENTATION

4e0n / octopus-reel

CyclotronResearchCentre / bidsme

SaiJeevanPuchakayala / BrainGazer

anindox8 / 2D-RetinaNet-for-Prostate-Localization-in-mpMRI

DorienHuijser / MRIsharingguide

EEG-Easy / EEG-Schizophrenia-vs-Healthy

grundm / graphCA

gsroberts1 / QVT

sahityamantravadi / cs231n-final-project

autism-research-centre / Normative_modeling

BeataWereszczynska / k-space_masking_for_MRI_denoising

DeepraMazumder / MRI-Based-Dementia-Progression-Prediction

jeevan6996 / Knee-Ligament-Tear-Assessment

Kratos997 / json_MRI_data_extraction

BeataWereszczynska / k-space_wght_msk_for_MRI_denoising

BeataWereszczynska / MRI_k-space-derived_details_edges

BeataWereszczynska / Swelling_tablet_fronts_D_k_from_MRI_T2_or_img

BeataWereszczynska / T1wIR_to_T1wSR

BeataWereszczynska / TI_TE_wish

BeataWereszczynska / TIandTE_wish

lorenzomagazzini / meg-ctf

brainlife / ui-fibernavigator

INFN-MRI / mrtwin