kishwarshafin

pepper

PEPPER-Margin-DeepVariant

helen

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

T2T_polishing_scripts

Scripts used for polishing T2T assembly

bonito

Convolution Basecaller for Oxford Nanopore Reads

jarvis

napper

N.A.P.P.E.R - Nanopore Alignment Pre-processing Pipeline using Encoded Runlength

BME-230B

Class lectures for BME-230B

cgl-kuberenetes

Job files for Kubernetes stuff

dissertation

friday_scripts

This repository is the supplementary material for FRIDAY.

GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects

kishwarshafin.github.io

Kishwar's personal website

lab-notes

Lab notes for weird things

mqvg

Logistic regression approach for better estimation of mapping quality produced by vg.

nanopore-helpers

helper scripts for nanopore projects

pipelines

pomoxis

Analysis components from Oxford Nanopore Research

segDupPlots

signalAlign

HMM-HDP models for MinION signal alignments

vision

C/C++ implementation of VISION.