rjdkmr

gcMapExplorer

Genome Contact Map Explorer - gcMapExplorer. Visit:

do_x3dna

To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.

gmx_clusterByFeatures

Features Based Conformational Clustering of MD trajectories. See details at:

g_mmpbsa

g_distMat

It calculates average minimum-distance matrix and other related matrices between two atom-groups from molecular dynamics trajectory (GROMACS, NAMD or AMBER).

pyOBabel

For more details visit homepage:

g_coordNdata

This program can be used to extract coordinates from the GROMACS MD Trajectory and to create GROMACS MD Trajectory from coordinate data.

g_resid_distrib

To calculate the residues position along X, Y and Z axes using GROMACS MD trajectory

g_RotTransDNA

To calculate rotational/translational displacement of the DNA from GROMACS MD trajectory

gmx_hole

To calculate channel radius using hole2 program for GROMACS MD trajectory

mutual_information

This program calculates mutual information and generalized correlation

ngl

WebGL protein viewer

python_example

Example pybind11 module built with a Python-based build system