Shi Lab

DP-MIA

Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data

PG-cGAN

Population-scale Genomics Data Augmentation Based on Conditional Generative Adversarial Networks

STI

Split Transformer Impute source code

PAR-GAN

PAR-GAN: Improving the Generalization of Generative Adversarial Networks Against Membership Inference Attacks

SCDA

Sparse Convolutional Denoising Autoencoders for Genotype Imputation

parEBEN

Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R

ADNI

predict ADAS and MMSE score based on genotype

GenoDiffusion

GenoDiffusion: Conditional Denoising Diffusion Probabilistic Model for Genomic Data Augmentation

Hi-C-integrative-catalog

Integrative TAD Catalog and TAD-SVs

Malaria-dsRNA-Transcriptome-Project

MicroRNA-Gene-Network-Colon

YeastPhenotypeClassification

Yeast Phenotype Prediciton

Awesome-Book-paper-tool

A curated list of amazing book, libraries, software and resources.

awesome-differential-privacy

list of differential-privacy related repositories

cancer-data

CNVmQTL

Courses

E2EGraph

EpiML

FedDP

Forest-GAN

FSF-GA

Genetic-Privacy-and-Security

Slides and Tutorials

HiCMap

LiteratureDL4Graph

MIP-SHE

This is the repository of membership inference perturbed- sparse homomorphic encryption model.

Offspring-GAN

This repository includes 1. code for offspring GAN 2. code for evaluation of synthetic data from offspring GAN 3. PCA plots for synthetic data generated by 3 diffferent GAN models.

SCP_DAE

A Sparse Convolutional Predictor with Denoising Autoencoders for Phenotype Prediction

TopoDiffusion

This is the repository for TopoDiffusion model.

UKBB_data