radseq-data

There are 1 repository under radseq-data topic.

thierrygosselin / radiator
RADseq Data Exploration, Manipulation and Visualization using R
radseq radseq-data imputation genotype-likelihoods filter genetics missingness outliers genomics genomic-data-analysis genomics-visualization gbs genotyping-by-sequencing visualization outliers-detection heterozygosity paralogs artifacts-detection batch-effects normalization
Language:HTML 57
thierrygosselin / stackr
stackr: an R package to run stacks software pipeline
radseq rad genotype-likelihoods filter genetics genomics genomic-data-analysis genomics-visualization radseq-data gbs genotyping-by-sequencing stackr
Language:R 26
assigner
thierrygosselin / assigner
Population assignment analysis using R
genomics datascience assignment-analysis assignment radseq radseq-data fst gbs genotyping-by-sequencing
Language:R 17
tkchafin / scripts
Random scripts, mostly for dealing with RADseq data and DNA sequence alignments
phylogenetics population-genetics radseq radseq-data
Language:Perl 15
grur
thierrygosselin / grur
grur: an R package tailored for RADseq data imputations
genomics genomics-visualization genomic-data-analysis imputation radseq radseq-data gbs machine-learning random-forest boosting-algorithms pca-analysis missing-data
Language:R 7
LauricReynes / FIS_distribution
R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the distribution of FIS across loci into discrete classes
genomic-data-analysis genomics-data genomics-visualization population-genetics population-genomics radseq radseq-data
1
eacooper400 / RAD_Pipeline_Info
Bioinformatics Pipeline for dRADseq Data
bioinformatics-pipeline radseq-data snp-genotyping denovo-assembly
Language:Perl 0
HobanLab / Morton_SSRvSNP_Empirical
Generation of RADseq markers for 2 rare Quercus spp., and how ex situ conservation measures with these markers compare to those generated with microsatellites
radseq-data quercus exsitu conservation r stacks
Language:HTML 0
LauricReynes / Clonal_assessment
R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the frequency of pairwise genetic distances among individuals.
genomics genomics-visualization population-genetics population-genomics radseq radseq-data
0
V-Z / RAD-Seq-scripts
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-scripts data-analysis data-science genomics metacentrum molecular-biology ngs ngs-analysis ngs-pipeline population-genomics radseq radseq-data
Language:Shell 0