There are 1 repository under reactome topic.
Explore biomolecular pathways in Reactome from the command-line or a Python script
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
Research into statistical distributions of genomes, proteomes and reactomes
OrientDB graph database version of the Reactome Database
Converting SBGN encoded pathways to the SIF file format
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
A research biochemical network explorer and genetic cytohistological encyclopedia.
Converts Reactome pathways to GPML format
some scripts to process transcriptomics and Chip-seq data
A set of GO-CAMs built automatically from Reactome pathways.
Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.
Exporter of the diagram layout to different formats
An example on how to use reactome Rest API
Service to generate images of top level pathway view (the fireworks).
pathfinder http://reactome.org/ graph binding
This fork is intended solely for generating a GSEA jar file that is compatible with Reactome.