proteogenomics
There are 1 repository under proteogenomics topic.
- Language:Java 44
- quantms
bigbio / quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Language:Nextflow 34 nf-core / quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Language:Nextflow 31smith-chem-wisc / mzLib
Library for mass spectrometry projects
Language:C# 26- Language:Nextflow 22
- Language:Python 10
- Language:Java 9
EuBIC / ReproducibleMSGuidelines
This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.
Language:JavaScript 7Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
Language:C# 7wenbostar / Customprodbj
Customized protein database construction
Language:Java 7- Language:R 7
- Language:Python 6
uclahs-cds / package-moPepGen
Multi-Omics Peptide Generator
Language:Python 6linas / biome-distribution
Research into statistical distributions of genomes, proteomes and reactomes
Language:Scheme 5The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
Language:Nextflow 5AstraBert / saccharomyces-pythia
Saccharomyces cerevisiae information, gene calling and ORF identification assistant
Language:Python 3A python library with scripts and helpers classes for quantms workflow
Language:Python 3- Language:Java 3
- Language:Nextflow 2
abiswas97 / DeNoPro
Denovo Proteogeomics pipeline to identify clinically relevent novel variants from RNAseq and Proteomics data.
Language:Python 1- Language:HTML 1
- Language:Java 1
Protegenomics analysis based on Pangenome references
Language:Jupyter Notebook 1chinmayaNK22 / Proteogenomic-Pipeline
Python packages for easy execution of proteogenomic workflow
Language:Python 1npinter / ProteoGenDB
ProteoGenDB: A Fast Proteogenomic Pipeline for Identifying Sequence Variants in Proteomics Data
Language:Python 1YueAndyQi / lncRNA_immunopeptidome_Scripts
Scripts for lncRNA Project is a novel mass spectrometry-based peptide sequencing pipeline of the identification of LncRNA-derived immunopeptidome.
Language:Python 1anuragraj / PgxSAVy
A tool for quality control and annotation of variant peptides after FDR in proteogenomics
Language:Perl 0beherasan / ProteoGenomics
Proteomic evidences can improve the existing genome annotation by finding novel coding regions or genome reannotations. These scripts can perform such tasks.
Language:Perl 0CPL-SeongminCheon / Trypsin_LysC_InSilico_Digestion
In Silico Trypsin/Lys-C Clevage Site Prediction
Language:Python 0srithegreat / codephoenix
My codes for proteomics, genomics and proteogenomics
Language:Python
