virulence-genes

There are 0 repository under virulence-genes topic.

• tseemann / abricate

  :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

  antimicrobial-resistance-genesbioinformatics-toolcontigsgenomic-regionsvirulence-genes
  Language:Perl 343

• fmalmeida / bacannot

  Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

  annotationantimicrobial-genes-annotationmethylation-annotationko-annotationpipelinevirulence-factorvirulence-genesmobile-genetic-elementsprophagesreproducible-researchgenome-browsergenome-analysisbarrnaprginextflowgenomic-islands-predictionprophage-sequences-predictionphigarorrna-predictioninsertion-sequences
  Language:Nextflow 96
• WGCA

  icaromsc / WGCA

  JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

  bioinformatics-workflowcomparative-genomicsgenomic-data-analysisgenomic-islandsprophagesresistomesnakemakevirulence-genes
  Language:Python 8

• IbrahimElzahaby / Erasmus_MC_Internship

  Plasmidome analysis to track the transfer route of AMR genes in bacteria

  fasta-sequencesplasmidfinderprokkarefseq-genbankrgipanarooabricateamr-detectionvirulence-genesantimicrobial-genes-annotationantimicrobial-resistance-genes
  Language:Jupyter Notebook 1
• Infant-Clostridium-perfringens-Paper

  raymondkiu / Infant-Clostridium-perfringens-Paper

  Source data files and sequence databases used in the paper

  ggplot2statsclostridium-perfringensvirulence-genesplasmid-sequences
  Language:R 1

• AmyOBro / MScProject

  An examination of genomic resistance and virulence of Escherichia marmotae dentified in deer faeces Portumna, Galway.

  antibiotic-resistanceescherichiaone-healthvirulence-genes
  Language:Shell 0

• ncbi / stxtyper

  StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.

  bioinformaticsbioinformatics-toolescherichia-coligenomicspathogenvirulence-genes
  Language:C++