Daylily Informatics

daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

zebra_day

Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.

fedex_tracking_day

Python Module Interfacing w/The FedEx Tracking API

github_markdown_text_colorizer

Service to return images of text where the input text can have font, font size and color set

img_stitcher_day

Playing around with merging images taken of the outside of a tube.

accept-a-payment

Learn how to accept a payment from customers around the world with a variety of payment methods.

alignstats-1

Comprehensive alignment, whole-genome coverage, and capture coverage statistics.

bulk_sms

bwa-mem-scale

cronicle-edge

Cronicle V2 (Orchestra) community prototype

Cyrius

A tool to genotype CYP2D6 with WGS data

e-commerce-site

Fullstack e-commerce POS system with bookings, customer and payments implementing microservice architecture. Containerised and hosted on AWS with Kong Gateway.

gspread

Google Sheets Python API

HGTector

HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.

libmaus

libmaus

MindTheGap

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

sambamba

Tools for working with SAM/BAM data

SMNCopyNumberCaller

A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS

VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

.github

github profile README.md

alignstats

Comprehensive alignment, whole-genome coverage, and capture coverage statistics.

bloom

Templated Abstract Polymorphic (and opinionated) LIMS

jinja2_fmt_day

Simple tool to standardize the indentation of jinja2 files.

yaml_config_day

Slim Python yaml Config Manager