Tom Kelly (TomKellyGenetics)

TomKellyGenetics

Geek Repo

Company:RIKEN IMS; H.U. Group @hugp-ri

Location:Akiruno, Tokyo, Japan

Home Page:https://orcid.org/0000-0003-3904-6690

Twitter:@tomkxy

Github PK Tool:Github PK Tool


Organizations
mikblacklab
nf-core
OtagoStudyGroup
rust-bio
swcarpentry-ja

Tom Kelly's repositories

leiden

Implementation of the Leiden algorithm called by reticulate in R. (CRAN)

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vioplot

Development version of vioplot R package (CRAN maintainer)

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graphsim

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

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tktools

Personal Repository of functions, tools, tweaks, aliases, and settings. R functions documented in package.

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zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

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hicup-plus

Hi-C data processing pipeline (with Dragen and HiSAT2 aligners)

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.github

Files for the @nf-core GitHub organisation

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assessment-archives

An archive of all the versions of the Carpentries surveys

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atac-seq-pipeline

ENCODE ATAC-seq pipeline

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bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

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bioc-rnaseq-ja

repository created automatically based on translations. Please submit Issues and PRs to https://github.com/swcarpentry-ja/i18n

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carpentries-coc

Community Documentation for the Carpentries

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cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

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cellranger_clean

10x Cell Ranger Docker Image

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dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

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Gviz

This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.

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hello-github

Evidence that GitHub contributions are a worthless measure of programming competency or work ethic

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i18n

Where all the translations are controlled from.

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matrixcalc

source for CRAN package matrixcalc

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MultilayerGraphs.jl

A Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs.

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nf-core-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

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presize

Precision Based Sample Size Calculation

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Rmpi

:exclamation: This is a read-only mirror of the CRAN R package repository. Rmpi — Interface (Wrapper) to MPI (Message-Passing Interface). Homepage: http://fisher.stats.uwo.ca/faculty/yu/Rmpi/

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rockstar

The Rockstar programming language specification

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rtracklayer

R interface to genome annotation files and the UCSC genome browser

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scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

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seurat

R toolkit for single cell genomics

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snow

:exclamation: This is a read-only mirror of the CRAN R package repository. snow — Simple Network of Workstations

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universc

UniverSC: a flexible cross-platform single-cell data processing pipeline

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