association-studies

There are 0 repository under association-studies topic.

YinLiLin / CMplot
📊 Circular and Rectangular Manhattan Plot
association-studies manhattan-plot
Language:R 489
VariantSpark
aehrc / VariantSpark
machine learning for genomic variants
variant-spark gwas random-forest genome association-studies vcf variantspark notebook databricks bioinformatics aws emr
Language:JavaScript 138
ramiromagno / gwasrapidd
gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
gwas-catalog r rest-client snp trait trait-ontology human association-studies
Language:R 83
swvanderlaan / MetaGWASToolKit
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
meta-analysis gwas gwas-dataset allele-frequencies variants indels genome association-studies chromosome allele-counts
Language:Shell 12
Poissonfish / iPat
iPat allows you to perform GWAS and GS with drags and clicks!
gwas gui genome-analysis genomics genomic-data-analysis gene-prediction ipat analysis genome association-studies vcf hapmap
Language:Java 9
fuxialexander / marvel
Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
association-studies bioinformatics disease epigenomics marvel nextflow noncoding pipeline wgs
Language:Python 7
KiranJavkar / PRAWNS
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
population-genomics comparative-genomics whole-genome-genotyping pan-genome-analysis bioinformatics genomics computational-biology antimicrobial-resistance bacterial-gwas antibiotic-resistance whole-genome-sequencing whole-genome-alignment genome-analysis parallel-programming association-studies microbial-genomics
Language:C++ 7
xinghuq / DeepGenomeScan
DeepGenomeScan: A Deep Learning Approach for Whole Genome Scan (WGS) and Genome-wide Association Studies (GWAS)
association-studies convolutional-neural-networks deep-learning genome genome-scan gwas
Language:R 6
daissi / thesias
THESIAS: Testing Haplotype Effects In Association Studies
bioinformatics genomics haplotype association-studies association-analysis java-interface
Language:C 2
jromanowska / Norwegian_drug_screening_ATC_level2
Scripts and results from an article on screening of Norwegian health registries in search for associations between drug usage and Parkinson's disease incidence.
association-studies drug-disease-associations epidemiology health-records parkinsons-disease prescriptions
Language:HTML 1
cfbeuchel / gwascatftp
R package to access GWAS Catalog FTP data
association-studies ftp gwas gwas-catalog r summary-statistics
Language:R 0
GWASpi / GWASpi
A tool to perform Genome-Wide Association Studies
genome-wide association-studies java pipeline
Language:Java 0
Yun-Ching-Chen / BOMP
Phenotype-Gene Association Test for Case-Control Study using NGS-Sequencing Data
association-studies statistical-tests genome-sequencing
Language:Java 0
swvanderlaan / covid19_hg
Reviewing the (preliminary) summary statistics from the COVID19 Host Genetics Initiative meta-analysis of genome-wide association studies (GWAS).
covid-19 covid19 gwas genome-wide association-studies summary-statistics
Language:HTML