pathogens

There are 2 repositories under pathogens topic.

• globalcitizen / 2019-wuhan-coronavirus-data

  2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)

  wuhan2019ncovcoronavirusvirology2019-ncovpathogensvirusespandemicopendataepedemiologyepedemiccovid-19covid19covid19-datacovid-virus
  Language:PHP 613
• MicrobeTrace

  CDCgov / MicrobeTrace

  The Visualization Multitool for Molecular Epidemiology and Bioinformatics

  bioinformaticsepidemiologynetwork-visualizationhivcdcpathogensphylogeneticsphylogenetic-treesphylogenyphylogenomicsgenomicsgenomics-visualizationgenomic-data-analysissequence-alignment
  Language:TypeScript 83

• bacpop / mandrake

  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

  embeddinggenomicspathogenscudagpu
  Language:Python 35

• ncrna / PathogenTrack

  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

  bioinformaticsscrna-seqpathogensbacteriavirusesngsmetagenomicscovid-19
  Language:Python 24

• Gibbons-Lab / isb_course_2023

  Materials and presentation for the 2023 ISB Microbiome course.

  16s-seqanalysismetabolic-modelsmicrobial-ecologymicrobiomepathogensqiime2sequencingsystems-biologyhacktoberfest
  Language:Jupyter Notebook 16

• cmmr / EsViritu

  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

  bioinformaticsmetagenomicsngspathogensviruses
  Language:Shell 12

• AABoyles / MicrobeTrace

  The Visualization Multitool for Molecular Epidemiology and Bioinformatics

  bioinformaticsepidemiologynetwork-graphhivcdcpathogensphylogeneticsphylogenetic-treesphylogenyphylogenomicsnetwork-visualizationnetwork-analysisgenomicsgenomics-visualizationgenomic-data-analysissequence-alignment
  Language:HTML 9

• mattmar / dynamAedes

  Model to simulate the population dynamics of four Aedes mosquito species.

  ecologymodellinginvasive-speciesmosquitoespathogens
  Language:R 7

• Camilo-Mora / Diseases

  Systematic assessment of the impacts of climate change on human pathogenic diseases

  climate-changeco2diseasesdroughtfloodsheatwaveslevelpathogensseawildfires
  Language:HTML 6
• aprank

  trypanosomatics / aprank

  This is APRANK, an Antigenic Protein and Peptide Ranker.

  antigenicityantigensepitopespathogens
  Language:R 3
• Dcoronariae_Popgen

  dendrologicus / Dcoronariae_Popgen

  Multiplexed SSR marker analysis of Diplocarpon coronariae reveals clonality within samples from Middle Europe and genetic distance from Asian and North American isolates

  rstatsrstudiopopulation-geneticspathogensapple
  1

• dendrologicus / PRRC_qPCR_T18

  Untangling the pea root rot complex leads to the identification of microbial markers for plant health

  rstudiorstatspathogensqpcragriculture
  1

• emdelponte / pyblastr

  Tracking the movement of cereal blast caused by Pyricularia

  wheatplantdiseasesdashboardpathogens
  Language:HTML 1

• ccdmb / PathoPore

  PathoPore - Longer Sequences and NextFlow Faster Analysis

  nanoporenextflow-pipelinepathogens
  Language:Nextflow 0

• psasickness / psasickness.github.io

  psasicknesspathogenpathogensschoolprojecthtmlcssjsgoogleanalyticsgoogle-analyticsedgechromesafari
  Language:JavaScript 0

• akarazeev / LauzHack19

  🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics

  biopythonbrain-infectionslauzhacklauzhack2019ncbipathogensrefseqviral-genomicsvoila
  Language:Jupyter Notebook

• pmoris / FiMAB-bioinformatics

  E-course on bioinformatics for the Fighting Malaria Across Borders training programme by the Institute of Tropical Medicine and VLIR-UOS (Belgium)

  bioinformaticstrainingtraining-materialsunixgenomicsmalariapathogensworkshop
  Language:SCSS