umap

There are 6 repositories under umap topic.

lmcinnes / umap
Uniform Manifold Approximation and Projection
umap dimensionality-reduction visualization machine-learning topological-data-analysis
Language:Python 6975
phoenix
Arize-ai / phoenix
AI Observability & Evaluation
ml-observability model-observability ai-roi llmops mlops ai-monitoring ai-observability ml-monitoring model-monitoring umap clustering llm-eval
Language:Jupyter Notebook 2745
PAIR-code / umap-js
JavaScript implementation of UMAP
javascript umap dimensionality-reduction
Language:JavaScript 355
jlmelville / uwot
An R package implementing the UMAP dimensionality reduction method.
r umap dimensionality-reduction
Language:R 308
umap-project / Leaflet.Storage
Manage map and features with Leaflet and expose them for backend storage through an API.
leaflet leaflet-plugin umap
Language:JavaScript 151
timsainb / ParametricUMAP_paper
Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep neural networks for representation and semi-supervised learning" (Sainburg, McInnes, Gentner, 2020).
umap dimensionality-reduction semisupervised-learning representation-learning machine-learning
Language:Jupyter Notebook 146
stemangiola / tidyseurat
Seurat meets tidyverse. The best of both worlds.
tibble single-cell-rna-seq seurat tidyverse ggplot2 pca umap tsne single-cell dplyr tidyr purrr normalization sct transcripts
Language:R 143
genular / pandora
PANDORA - Predictive Analytics aNd Data Oriented Research Applications :computer:
machine-learning systems-biology data-science data-visualization data-mining pandora bioinformatics biomarkers clinical-data clustering data-integration drug-discovery genomic-data-analysis microbiome predictive-analytics transcriptomics tsne umap unsupervised-machine-learning
Language:Vue 133
Renumics / renumics-rag
Visualization for a Retrieval-Augmented Generation (RAG) Assistant 🤖➕📚🟰❤️
huggingface langchain openai retrieval-augmented-generation streamlit large-language-models llm machine-learning rag retrival-augmented umap visualization
Language:Python 133
tkonopka / umap
Uniform Manifold Approximation and Projection - R package
dimensionality-reduction umap
Language:R 130
dillondaudert / UMAP.jl
Uniform Manifold Approximation and Projection (UMAP) implementation in Julia
dimensionality-reduction julia machine-learning topological-data-analysis umap visualization
Language:Julia 127
rezakj / iCellR
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
singel-cell-sequencing clustering-algorithm clustering normalization umap pseudotime scrna-seq scvdj-seq cite-seq 3d intractive-graph 10xgenomics dropout batch-normalization imputation diffusion-maps cell-type-classification icellr
Language:R 118
ropensci-archive / umapr
:no_entry: ARCHIVED :no_entry: Wraps UMAP Algorithm for Dimension Reduction
unconf18 umap reticulate r r-package rstats unconf
Language:R 112
Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
scrnaseq 3dtsne 3dpca seurat rna-seq-analysis umap 3dumap scrnaseq-data plotting seurat-objects
Language:R 109
hyungkwonko / umato
Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)
umato dimensionality-reduction visualization topological-data-analysis umap
Language:Jupyter Notebook 105
saehm / DruidJS
A JavaScript Library for Dimensionality Reduction
dimensionality-reduction clustering javascript-library unsupervised-learning matrix t-sne mds pca umap ltsa lle isomap fastmap
Language:JavaScript 104
parashardhapola / scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
bioinformatics single-cell-genomics single-cell-rna-seq dimension-reduction clustering umap tsne big-data cite-seq single-cell-atac-seq memory-efficient scalable-data-analysis scrna-seq scatac-seq pseudotime multiomics gene-modules differential-expression graph-analytics genomics
Language:Python 89
VenoMKO / RealEditor
Tera Online 32-bit and 64-bit client package(*.gpk, *.gmp, *.upk, *.umap, *.u) editor/viewer
tera tera-online tera-mods gpk gpk-editor 3d-models umap gmp-export upk gpk-mods
Language:C++ 80
xieguigang / sciBASIC
sciBASIC# is a kind of dialect language which is derive from the native VB.NET language, and written for the data scientist.
microsoft-visualbasic data-mining machine-learning netcdf hdf5 data-science network-visualization manifold graphquery umap t-sne hqx cnn
Language:Visual Basic .NET 74
jlmelville / smallvis
R package for dimensionality reduction of small datasets
dimensionality-reduction r t-sne largevis umap
Language:R 67
Embeddings2Image
YontiLevin / Embeddings2Image
create "Karpathy's style" 2d images out of your image embeddings
python tsne visualization umap
Language:Python 65
snakers4 / playing_with_vae
Comparing FC VAE / FCN VAE / PCA / UMAP on MNIST / FMNIST
pytorch python3 variational-autoencoder fashion-mnist mnist tutorial beginner umap pca embedding
Language:Jupyter Notebook 59
thiswillbeyourgithub / AnnA_Anki_neuronal_Appendix
Using machine learning on your anki collection to enhance the scheduling via semantic clustering and semantic similarity
ai anki bert clustering doc2vec embedding flashcards kmeans latent machinelearning neighbourhood nlp pca sbert scheduler sementics sentence-embeddings umap
Language:Python 57
YoujiaZhang / SigmaCCS
(communications chemistry 2023) Highly accurate and large-scale collision cross section prediction with graph neural network for compound identification
deep-learning machine-learning gnn ccs gcn umap
Language:Jupyter Notebook 57
davisidarta / dbMAP
A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.
dimensionality-reduction single-cell visualization high-dimensional diffusion-process machine-learning graph-layout umap nearest-neighbors denoising
Language:Python 45
dlab-berkeley / Unsupervised-Learning-in-R
Workshop (6 hours): Clustering (Hdbscan, LCA, Hopach), dimension reduction (UMAP, GLRM), and anomaly detection (isolation forests).
unsupervised-learning clustering dimensionality-reduction glrm hdbscan latent-class-analysis umap isolation-forests
Language:R 45
milescsmith / ReductionWrappers
R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
singlecellexperiment seurat wrapper singlecellexperiment-objects bioinformatics paga umap phate tsne opentsne forceatlas2 force-directed-graphs python wrappers pacmap dimensionality-reduction dimension-reduction dimensional-reduction
Language:R 35
curiosity-ai / umap-sharp
C# library for fast embeddings projection using Uniform Manifold Approximation and Projection
umap tsne projection embeddings artificial-intelligence nlp natural-language-processing
Language:C# 33
sinanatra / image-tsne
This repo contains a series of notebook to arrange cultural artifacts and explore patters in metadata. 🎨
cultural-heritage tsne umap
Language:Jupyter Notebook 30
louisgeisler / Doc2Map
Transform a corpus of text documents (any kind) into a map with different zoom levels and topics names to summarise sub corpus of similar docs.
javascript python umap visualization leaflet map medium-article python-package top2vec towards-data-science
Language:HTML 25
pityka / lamp
deep learning and scientific computing framework with native CPU and GPU backend for the Scala programming language
scala libtorch deep-learning neural-networks tensor umap extratrees machine-learning scala-library gpu pytorch gpu-acceleration
Language:Scala 25
jumphone / BEER
BEER: Batch EffEct Remover for single-cell data
single-cell-analysis batch-effects scrna-seq scatac-seq umap
Language:R 23
tag-bio / umap-java
A Uniform Manifold Approximation and Projection (UMAP) library for Java, developed by Tag.bio in collaboration with Real Time Genomics.
umap java algorithms tagbio realtimegenomics
Language:Java 23
humitos / osm-pois
Show POIs from OSM in a map using OverpassAPI
osm pois openstreemap leaflet umap upoi
Language:JavaScript 22
harbourlab / PieParty
represent each cell in UMAP plots as a pie chart
seurat single-cell-analysis umap
Language:Python 16
EricKenjiLee / WaveMAP_Paper
This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linear Dimensionality Reduction on Extracellular Waveforms Reveals Physiological, Functional, and Laminar Diversity in Premotor Cortex.
dimensionality-reduction umap louvain-community-detection shap
Language:Jupyter Notebook 15

umap

lmcinnes / umap

Arize-ai / phoenix

PAIR-code / umap-js

jlmelville / uwot

umap-project / Leaflet.Storage

timsainb / ParametricUMAP_paper

stemangiola / tidyseurat

genular / pandora

Renumics / renumics-rag

tkonopka / umap

dillondaudert / UMAP.jl

rezakj / iCellR

ropensci-archive / umapr

Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0

hyungkwonko / umato

saehm / DruidJS

parashardhapola / scarf

VenoMKO / RealEditor

xieguigang / sciBASIC

jlmelville / smallvis

YontiLevin / Embeddings2Image

snakers4 / playing_with_vae

thiswillbeyourgithub / AnnA_Anki_neuronal_Appendix

YoujiaZhang / SigmaCCS

davisidarta / dbMAP

dlab-berkeley / Unsupervised-Learning-in-R

milescsmith / ReductionWrappers

curiosity-ai / umap-sharp

sinanatra / image-tsne

louisgeisler / Doc2Map

pityka / lamp

jumphone / BEER

tag-bio / umap-java

humitos / osm-pois

harbourlab / PieParty

EricKenjiLee / WaveMAP_Paper