ishamada / bioiX

PCA on Genotypes

Genes and Geography -- a Bioinformatics Project

A Quick Guide to Organizing Computational Biology Projects

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000424

TUTORIALS:

Dr. Maria video:

https://www.youtube.com/watch?v=-PCKK_nwFdA

Dr. Maria Repo:

https://github.com/MariaNattestad/pca-on-genotypes

Python Code:

https://github.com/MariaNattestad/pca-on-genotypes/blob/main/vcf_to_matrix.py

Human Genetic Variation & VCF:

https://www.ebi.ac.uk/training/online/courses/human-genetic-variation-introduction/

https://www.ebi.ac.uk/training/materials/exploringhumangeneticvariationmaterials/

PCA :

https://www.youtube.com/watch?v=HMOI_lkzW08

CLOUD:

https://saturncloud.io/