resistome

There are 1 repository under resistome topic.

• tseemann / nullarbor

  :floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

  bacteriareportfastqdenovo-assemblyvariant-callinggenotypingresistomevirulomephylogenomicspublic-health
  Language:Perl 130

• will-rowe / groot

  A resistome profiler for Graphing Resistance Out Of meTagenomes

  antibiotic-resistancemetagenomicsresistomeminhashlshalignment
  Language:Go 63
• rMAP

  GunzIvan28 / rMAP

  Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS

  bacteriaresistomeeskapewgsilluminaphylogenomicsmobilome
  Language:Shell 18
• WGCA

  icaromsc / WGCA

  JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

  genomic-islandsprophagesvirulence-genesresistomecomparative-genomicsgenomic-data-analysisbioinformatics-workflowsnakemake
  Language:Python 8

• will-rowe / drax

  A pipeline for Detecting Resistome Associated taXa

  resistomemetagenomics
  Language:Groovy 4

• lizramirezcar / multi-genome

  Mapping, snps calling, phylogeny

  bioinformaticsbacterial-genomesngssnpsphylogenetic-treesresistome
  Language:Shell 1

• sauravbsaha / uCAREChemSuiteCLI

  Predicts bacterial resistome

  escherichiacoliresistomepredictorbacteriagram-negativedrugresistancer-packagecran-rcran
  Language:R 1

• ralsallaq / metaGx_make

  A number of pipelines that are managed by Gnu Make for conducting various analyses on high-throughput NGS

  assembly-basedresistomeread-basedgene-discovery
  Language:Shell 0

• yuqing-feng / script_for_meta

  Repo for scripts/codes applied in my studies

  amplicon-sequencingmetagenomicsresistomerna-seq
  0